Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PCDHA12-202ENST00000613593 2588 ntBASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 AC004687.1-201ENST00000579003 1625 ntBASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 LINC01465-201ENST00000408887 1940 ntBASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 RARRES2P1-201ENST00000474487 481 ntBASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 AC067852.2-201ENST00000590513 2313 ntBASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 AL354751.1-201ENST00000412768 1863 ntBASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 Z92544.1-202ENST00000571933 1220 ntBASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 PKD1P1-201ENST00000458669 6805 ntBASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC28AQ8IWP9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC28AQ8IWP9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 SIRPAP1-201ENST00000448467 1770 ntBASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC28AQ8IWP9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms