Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 H19-201ENST00000411754 1788 ntTSL 5 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 CD70-202ENST00000423145 881 ntTSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 TSPY21P-201ENST00000433481 731 ntBASIC13.81□□□□□ -0.2
CSMD3Q7Z407 TSPY23P-201ENST00000440136 739 ntBASIC13.81□□□□□ -0.2
CSMD3Q7Z407 KRT18P16-201ENST00000510337 1294 ntBASIC13.81□□□□□ -0.2
CSMD3Q7Z407 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 AC069148.1-201ENST00000608741 768 ntBASIC13.81□□□□□ -0.2
CSMD3Q7Z407 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CSMD3Q7Z407 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 RCC2P6-201ENST00000526625 1557 ntBASIC13.8□□□□□ -0.2
CSMD3Q7Z407 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 FXN-203ENST00000396366 922 ntTSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 SLC25A1P2-201ENST00000430693 912 ntBASIC13.8□□□□□ -0.2
CSMD3Q7Z407 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 FDX1P1-201ENST00000449115 551 ntBASIC13.8□□□□□ -0.2
CSMD3Q7Z407 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CSMD3Q7Z407 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 HYMAI.1-201ENST00000620949 238 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 HIST1H2APS4-201ENST00000362070 348 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 YBX1P10-201ENST00000444752 975 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AC092647.4-201ENST00000457211 535 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AL691432.3-201ENST00000621860 400 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AC128688.1-201ENST00000487626 519 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 MIR2861-201ENST00000636310 90 ntBASIC13.79□□□□□ -0.2
CSMD3Q7Z407 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CSMD3Q7Z407 AC233723.2-201ENST00000623798 2106 ntBASIC13.78□□□□□ -0.2
CSMD3Q7Z407 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CSMD3Q7Z407 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms