Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC144BQ3MJ40 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 AP001412.1-201ENST00000608405 714 ntBASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
CCDC144BQ3MJ40 AC099778.1-201ENST00000568593 1911 ntBASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 AL135905.2-201ENST00000584934 1404 ntBASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 LINC01023-201ENST00000606054 436 ntBASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CCDC144BQ3MJ40 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 FAM210CP-201ENST00000445714 574 ntBASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CCDC144BQ3MJ40 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 AL020996.1-203ENST00000536896 2307 ntBASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 AC113410.3-201ENST00000623366 203 ntBASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms