Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
RFX4Q33E94 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RFX4Q33E94 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RFX4Q33E94 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX4Q33E94 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RFX4Q33E94 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX4Q33E94 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.33■□□□□ 0.53
RFX4Q33E94 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
RFX4Q33E94 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX4Q33E94 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFX4Q33E94 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.33■□□□□ 0.53
RFX4Q33E94 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX4Q33E94 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFX4Q33E94 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 AC007322.3-201ENST00000426526 701 ntBASIC18.33■□□□□ 0.52
RFX4Q33E94 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
RFX4Q33E94 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX4Q33E94 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.33■□□□□ 0.52
RFX4Q33E94 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RFX4Q33E94 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 HCG11-201ENST00000411553 5696 ntBASIC18.33■□□□□ 0.52
RFX4Q33E94 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
RFX4Q33E94 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX4Q33E94 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX4Q33E94 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RFX4Q33E94 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
RFX4Q33E94 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
RFX4Q33E94 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 AC004854.2-201ENST00000608450 1441 ntBASIC18.32■□□□□ 0.52
RFX4Q33E94 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX4Q33E94 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 AC026471.1-201ENST00000564629 3026 ntBASIC18.32■□□□□ 0.52
RFX4Q33E94 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX4Q33E94 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX4Q33E94 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 KRT18P14-201ENST00000534205 1250 ntBASIC18.32■□□□□ 0.52
RFX4Q33E94 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX4Q33E94 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.32■□□□□ 0.52
RFX4Q33E94 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX4Q33E94 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
RFX4Q33E94 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
RFX4Q33E94 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX4Q33E94 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
RFX4Q33E94 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.31■□□□□ 0.52
RFX4Q33E94 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
RFX4Q33E94 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX4Q33E94 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX4Q33E94 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX4Q33E94 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms