Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.8■□□□□ 0.44
LSM3P62310 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 AC135050.7-201ENST00000624508 2218 ntBASIC17.8■□□□□ 0.44
LSM3P62310 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.79■□□□□ 0.44
LSM3P62310 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.79■□□□□ 0.44
LSM3P62310 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.79■□□□□ 0.44
LSM3P62310 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM3P62310 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LSM3P62310 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LSM3P62310 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM3P62310 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LSM3P62310 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM3P62310 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.78■□□□□ 0.44
LSM3P62310 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM3P62310 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM3P62310 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.78■□□□□ 0.44
LSM3P62310 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM3P62310 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM3P62310 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM3P62310 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM3P62310 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
LSM3P62310 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM3P62310 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
LSM3P62310 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
LSM3P62310 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.77■□□□□ 0.44
LSM3P62310 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.77■□□□□ 0.44
LSM3P62310 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.77■□□□□ 0.44
LSM3P62310 AC239859.2-201ENST00000444165 318 ntBASIC17.77■□□□□ 0.44
LSM3P62310 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.77■□□□□ 0.44
LSM3P62310 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.77■□□□□ 0.44
LSM3P62310 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LSM3P62310 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LSM3P62310 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM3P62310 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LSM3P62310 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.77■□□□□ 0.43
LSM3P62310 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.77■□□□□ 0.43
LSM3P62310 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
LSM3P62310 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.77■□□□□ 0.43
LSM3P62310 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LSM3P62310 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LSM3P62310 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LSM3P62310 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM3P62310 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.76■□□□□ 0.43
LSM3P62310 AC079598.2-202ENST00000546624 1451 ntBASIC17.76■□□□□ 0.43
LSM3P62310 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM3P62310 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM3P62310 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM3P62310 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LSM3P62310 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms