Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TNFRSF4P43489 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 ARMC10P1-201ENST00000313754 855 ntBASIC19.92■□□□□ 0.78
TNFRSF4P43489 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TNFRSF4P43489 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TNFRSF4P43489 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 CRYGFP-201ENST00000418459 633 ntBASIC19.91■□□□□ 0.78
TNFRSF4P43489 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 KRT18P57-201ENST00000443599 1254 ntBASIC19.91■□□□□ 0.78
TNFRSF4P43489 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 AP000692.2-201ENST00000608391 879 ntBASIC19.91■□□□□ 0.78
TNFRSF4P43489 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 HLA-A-209ENST00000638375 975 ntBASIC19.91■□□□□ 0.78
TNFRSF4P43489 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 SMG8-203ENST00000578922 2178 ntBASIC19.91■□□□□ 0.78
TNFRSF4P43489 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.91■□□□□ 0.78
TNFRSF4P43489 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFRSF4P43489 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.9■□□□□ 0.78
TNFRSF4P43489 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFRSF4P43489 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFRSF4P43489 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFRSF4P43489 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TNFRSF4P43489 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 AC128688.1-201ENST00000487626 519 ntBASIC19.89■□□□□ 0.77
TNFRSF4P43489 RCC2P6-201ENST00000526625 1557 ntBASIC19.89■□□□□ 0.77
TNFRSF4P43489 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 TMEM179-206ENST00000616017 1645 ntBASIC19.89■□□□□ 0.77
TNFRSF4P43489 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFRSF4P43489 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TNFRSF4P43489 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms