Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.08■□□□□ 0.48
RFC3P40938 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.08■□□□□ 0.48
RFC3P40938 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RFC3P40938 RARRES2P10-201ENST00000564312 460 ntBASIC18.08■□□□□ 0.48
RFC3P40938 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
RFC3P40938 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RFC3P40938 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.08■□□□□ 0.48
RFC3P40938 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFC3P40938 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFC3P40938 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.08■□□□□ 0.48
RFC3P40938 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.08■□□□□ 0.48
RFC3P40938 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RFC3P40938 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RFC3P40938 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 TSPY15P-201ENST00000457163 923 ntBASIC18.07■□□□□ 0.48
RFC3P40938 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.07■□□□□ 0.48
RFC3P40938 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.07■□□□□ 0.48
RFC3P40938 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.07■□□□□ 0.48
RFC3P40938 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
RFC3P40938 AP001412.1-201ENST00000608405 714 ntBASIC18.07■□□□□ 0.48
RFC3P40938 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
RFC3P40938 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFC3P40938 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RFC3P40938 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.06■□□□□ 0.48
RFC3P40938 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.06■□□□□ 0.48
RFC3P40938 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RFC3P40938 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
RFC3P40938 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.06■□□□□ 0.48
RFC3P40938 KRT16P5-201ENST00000455284 522 ntBASIC18.06■□□□□ 0.48
RFC3P40938 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.06■□□□□ 0.48
RFC3P40938 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RFC3P40938 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RFC3P40938 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFC3P40938 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RFC3P40938 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.05■□□□□ 0.48
RFC3P40938 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.05■□□□□ 0.48
RFC3P40938 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.05■□□□□ 0.48
RFC3P40938 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.05■□□□□ 0.48
RFC3P40938 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.05■□□□□ 0.48
RFC3P40938 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
RFC3P40938 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFC3P40938 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RFC3P40938 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
RFC3P40938 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.04■□□□□ 0.48
RFC3P40938 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFC3P40938 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.04■□□□□ 0.48
RFC3P40938 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.04■□□□□ 0.48
RFC3P40938 ECEL1P3-201ENST00000427961 737 ntBASIC18.04■□□□□ 0.48
RFC3P40938 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.04■□□□□ 0.48
RFC3P40938 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.04■□□□□ 0.48
RFC3P40938 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.04■□□□□ 0.48
RFC3P40938 AF186192.3-201ENST00000583427 947 ntBASIC18.04■□□□□ 0.48
RFC3P40938 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.04■□□□□ 0.48
RFC3P40938 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms