Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.86■□□□□ 0.93
BDNFP23560 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.86■□□□□ 0.93
BDNFP23560 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.86■□□□□ 0.93
BDNFP23560 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.86■□□□□ 0.93
BDNFP23560 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
BDNFP23560 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 AL049637.2-201ENST00000641778 930 ntBASIC20.86■□□□□ 0.93
BDNFP23560 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.86■□□□□ 0.93
BDNFP23560 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.86■□□□□ 0.93
BDNFP23560 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.86■□□□□ 0.93
BDNFP23560 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
BDNFP23560 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
BDNFP23560 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
BDNFP23560 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
BDNFP23560 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.85■□□□□ 0.93
BDNFP23560 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
BDNFP23560 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
BDNFP23560 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.85■□□□□ 0.93
BDNFP23560 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.85■□□□□ 0.93
BDNFP23560 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.85■□□□□ 0.93
BDNFP23560 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.85■□□□□ 0.93
BDNFP23560 MIR4497-201ENST00000583208 89 ntBASIC20.85■□□□□ 0.93
BDNFP23560 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.85■□□□□ 0.93
BDNFP23560 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 AL691432.2-201ENST00000607222 2038 ntBASIC20.85■□□□□ 0.93
BDNFP23560 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BDNFP23560 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
BDNFP23560 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
BDNFP23560 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.84■□□□□ 0.93
BDNFP23560 AC113410.3-201ENST00000623366 203 ntBASIC20.84■□□□□ 0.93
BDNFP23560 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
BDNFP23560 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.84■□□□□ 0.93
BDNFP23560 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BDNFP23560 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
BDNFP23560 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
BDNFP23560 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
BDNFP23560 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
BDNFP23560 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.83■□□□□ 0.93
BDNFP23560 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
BDNFP23560 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.83■□□□□ 0.93
BDNFP23560 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
BDNFP23560 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.83■□□□□ 0.93
BDNFP23560 TSPY7P-201ENST00000431358 1114 ntBASIC20.83■□□□□ 0.93
BDNFP23560 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.83■□□□□ 0.93
BDNFP23560 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
BDNFP23560 AF186192.3-201ENST00000583427 947 ntBASIC20.83■□□□□ 0.93
BDNFP23560 AP001412.1-201ENST00000608405 714 ntBASIC20.83■□□□□ 0.93
BDNFP23560 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
BDNFP23560 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BDNFP23560 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BDNFP23560 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
BDNFP23560 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.83■□□□□ 0.92
BDNFP23560 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
BDNFP23560 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
BDNFP23560 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.83■□□□□ 0.92
BDNFP23560 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BDNFP23560 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.83■□□□□ 0.92
BDNFP23560 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BDNFP23560 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
BDNFP23560 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 AC099778.1-201ENST00000568593 1911 ntBASIC20.82■□□□□ 0.92
BDNFP23560 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms