Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.58■□□□□ 0.88
HMGA1P17096 AL512408.1-201ENST00000569378 2000 ntBASIC20.58■□□□□ 0.88
HMGA1P17096 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGA1P17096 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGA1P17096 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.57■□□□□ 0.88
HMGA1P17096 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 UNC93B2-201ENST00000285383 730 ntBASIC20.57■□□□□ 0.88
HMGA1P17096 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 MESTP1-201ENST00000404287 994 ntBASIC20.57■□□□□ 0.88
HMGA1P17096 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGA1P17096 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGA1P17096 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HMGA1P17096 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGA1P17096 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGA1P17096 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGA1P17096 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGA1P17096 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGA1P17096 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
HMGA1P17096 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGA1P17096 AL031985.4-201ENST00000642138 673 ntBASIC20.56■□□□□ 0.88
HMGA1P17096 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGA1P17096 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.56■□□□□ 0.88
HMGA1P17096 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGA1P17096 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 AL162377.1-201ENST00000618844 1793 ntBASIC20.55■□□□□ 0.88
HMGA1P17096 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGA1P17096 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGA1P17096 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGA1P17096 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
HMGA1P17096 TMEM179-206ENST00000616017 1645 ntBASIC20.55■□□□□ 0.88
HMGA1P17096 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
HMGA1P17096 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HMGA1P17096 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HMGA1P17096 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGA1P17096 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGA1P17096 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.54■□□□□ 0.88
HMGA1P17096 AC004980.1-204ENST00000429707 299 ntBASIC20.54■□□□□ 0.88
HMGA1P17096 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.54■□□□□ 0.88
HMGA1P17096 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGA1P17096 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGA1P17096 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGA1P17096 FEM1AP1-201ENST00000431297 1995 ntBASIC20.54■□□□□ 0.88
HMGA1P17096 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGA1P17096 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGA1P17096 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGA1P17096 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGA1P17096 MIR1238-201ENST00000408483 83 ntBASIC20.53■□□□□ 0.88
HMGA1P17096 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGA1P17096 AC026271.3-201ENST00000571884 352 ntBASIC20.53■□□□□ 0.88
HMGA1P17096 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.53■□□□□ 0.88
HMGA1P17096 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGA1P17096 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGA1P17096 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
HMGA1P17096 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGA1P17096 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGA1P17096 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HMGA1P17096 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGA1P17096 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 AL390955.1-201ENST00000428694 934 ntBASIC20.52■□□□□ 0.88
HMGA1P17096 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGA1P17096 FITM1-202ENST00000559294 800 ntBASIC20.52■□□□□ 0.88
HMGA1P17096 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGA1P17096 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGA1P17096 HLA-A-209ENST00000638375 975 ntBASIC20.52■□□□□ 0.88
HMGA1P17096 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGA1P17096 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HMGA1P17096 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HMGA1P17096 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
HMGA1P17096 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms