Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.55■□□□□ 0.88
VCANP13611 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.54■□□□□ 0.88
VCANP13611 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.54■□□□□ 0.88
VCANP13611 HLA-J-202ENST00000469281 1241 ntBASIC20.54■□□□□ 0.88
VCANP13611 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.54■□□□□ 0.88
VCANP13611 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.54■□□□□ 0.88
VCANP13611 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.54■□□□□ 0.88
VCANP13611 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
VCANP13611 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 MFAP1P1-201ENST00000442257 1255 ntBASIC20.54■□□□□ 0.88
VCANP13611 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.54■□□□□ 0.88
VCANP13611 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
VCANP13611 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.54■□□□□ 0.88
VCANP13611 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.54■□□□□ 0.88
VCANP13611 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.54■□□□□ 0.88
VCANP13611 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCANP13611 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
VCANP13611 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
VCANP13611 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.53■□□□□ 0.88
VCANP13611 IL9RP2-201ENST00000423948 1312 ntBASIC20.53■□□□□ 0.88
VCANP13611 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VCANP13611 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VCANP13611 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.53■□□□□ 0.88
VCANP13611 AP002383.4-201ENST00000442518 975 ntBASIC20.53■□□□□ 0.88
VCANP13611 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.53■□□□□ 0.88
VCANP13611 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.53■□□□□ 0.88
VCANP13611 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCANP13611 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCANP13611 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCANP13611 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.52■□□□□ 0.88
VCANP13611 SPDYE15P-201ENST00000424157 909 ntBASIC20.52■□□□□ 0.88
VCANP13611 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.52■□□□□ 0.88
VCANP13611 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
VCANP13611 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.52■□□□□ 0.88
VCANP13611 C1orf229-201ENST00000623686 2258 ntBASIC20.52■□□□□ 0.88
VCANP13611 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VCANP13611 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCANP13611 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.52■□□□□ 0.88
VCANP13611 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
VCANP13611 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VCANP13611 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VCANP13611 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.51■□□□□ 0.87
VCANP13611 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.51■□□□□ 0.87
VCANP13611 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.51■□□□□ 0.87
VCANP13611 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
VCANP13611 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCANP13611 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.51■□□□□ 0.87
VCANP13611 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VCANP13611 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.51■□□□□ 0.87
VCANP13611 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.51■□□□□ 0.87
VCANP13611 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.51■□□□□ 0.87
VCANP13611 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VCANP13611 AL023973.1-201ENST00000624619 620 ntBASIC20.51■□□□□ 0.87
VCANP13611 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 AL590627.1-203ENST00000421194 1026 ntBASIC20.5■□□□□ 0.87
VCANP13611 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.5■□□□□ 0.87
VCANP13611 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCANP13611 MIR564-202ENST00000385049 94 ntBASIC20.5■□□□□ 0.87
VCANP13611 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VCANP13611 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms