Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 TERF1P2-201ENST00000583350 1212 ntBASIC17.56■□□□□ 0.4
LIMS3P0CW19 AL031963.3-201ENST00000606441 850 ntBASIC17.56■□□□□ 0.4
LIMS3P0CW19 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
LIMS3P0CW19 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS3P0CW19 AC004854.2-201ENST00000608450 1441 ntBASIC17.55■□□□□ 0.4
LIMS3P0CW19 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.55■□□□□ 0.4
LIMS3P0CW19 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMS3P0CW19 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIMS3P0CW19 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMS3P0CW19 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 AC007613.1-201ENST00000572811 2597 ntBASIC17.53■□□□□ 0.4
LIMS3P0CW19 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 AC005082.1-201ENST00000413042 2259 ntBASIC17.53■□□□□ 0.4
LIMS3P0CW19 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 KRT8P20-201ENST00000423953 1409 ntBASIC17.53■□□□□ 0.4
LIMS3P0CW19 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMS3P0CW19 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMS3P0CW19 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS3P0CW19 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMS3P0CW19 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMS3P0CW19 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms