Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC008040.2-201ENST00000461049 708 ntBASIC24.31■■□□□ 1.48
COL4A1P02462 ECEL1P2-202ENST00000465689 757 ntBASIC24.31■■□□□ 1.48
COL4A1P02462 AC005363.2-201ENST00000618631 242 ntBASIC24.31■■□□□ 1.48
COL4A1P02462 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.31■■□□□ 1.48
COL4A1P02462 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.31■■□□□ 1.48
COL4A1P02462 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
COL4A1P02462 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
COL4A1P02462 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.31■■□□□ 1.48
COL4A1P02462 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.31■■□□□ 1.48
COL4A1P02462 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC24.31■■□□□ 1.48
COL4A1P02462 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.31■■□□□ 1.48
COL4A1P02462 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A1P02462 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC24.3■■□□□ 1.48
COL4A1P02462 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC24.3■■□□□ 1.48
COL4A1P02462 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.3■■□□□ 1.48
COL4A1P02462 AP005242.2-201ENST00000580065 1175 ntBASIC24.3■■□□□ 1.48
COL4A1P02462 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC24.3■■□□□ 1.48
COL4A1P02462 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.3■■□□□ 1.48
COL4A1P02462 DGCR10-201ENST00000609839 495 ntBASIC24.3■■□□□ 1.48
COL4A1P02462 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
COL4A1P02462 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL4A1P02462 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL4A1P02462 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL4A1P02462 AC104076.2-201ENST00000448912 469 ntBASIC24.3■■□□□ 1.48
COL4A1P02462 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC24.3■■□□□ 1.48
COL4A1P02462 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC24.3■■□□□ 1.48
COL4A1P02462 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC24.3■■□□□ 1.48
COL4A1P02462 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC24.29■■□□□ 1.48
COL4A1P02462 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC24.29■■□□□ 1.48
COL4A1P02462 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
COL4A1P02462 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
COL4A1P02462 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A1P02462 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC24.29■■□□□ 1.48
COL4A1P02462 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.28■■□□□ 1.48
COL4A1P02462 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL4A1P02462 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC24.28■■□□□ 1.48
COL4A1P02462 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.28■■□□□ 1.48
COL4A1P02462 DUX4L26-201ENST00000489078 1255 ntBASIC24.28■■□□□ 1.48
COL4A1P02462 WWOX-216ENST00000569818 525 ntBASIC24.28■■□□□ 1.48
COL4A1P02462 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL4A1P02462 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
COL4A1P02462 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.28■■□□□ 1.48
COL4A1P02462 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC24.28■■□□□ 1.48
COL4A1P02462 MOK-225ENST00000522867 1883 ntTSL 5 BASIC24.28■■□□□ 1.48
COL4A1P02462 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
COL4A1P02462 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
COL4A1P02462 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC24.28■■□□□ 1.48
COL4A1P02462 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
COL4A1P02462 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 Z85996.1-201ENST00000494644 937 ntBASIC24.27■■□□□ 1.48
COL4A1P02462 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC24.27■■□□□ 1.48
COL4A1P02462 FAM87A-204ENST00000613235 858 ntBASIC24.27■■□□□ 1.48
COL4A1P02462 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 FSCN1P1-201ENST00000568912 1481 ntBASIC24.27■■□□□ 1.48
COL4A1P02462 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
COL4A1P02462 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC24.27■■□□□ 1.48
COL4A1P02462 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
COL4A1P02462 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
COL4A1P02462 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC24.27■■□□□ 1.48
COL4A1P02462 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24.27■■□□□ 1.48
COL4A1P02462 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC24.27■■□□□ 1.48
COL4A1P02462 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL4A1P02462 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.27■■□□□ 1.47
COL4A1P02462 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.27■■□□□ 1.47
COL4A1P02462 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL4A1P02462 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
COL4A1P02462 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms