Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN9O95484 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN9O95484 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.11■□□□□ 0.65
CLDN9O95484 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.11■□□□□ 0.65
CLDN9O95484 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.11■□□□□ 0.65
CLDN9O95484 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CLDN9O95484 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN9O95484 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN9O95484 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN9O95484 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CLDN9O95484 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN9O95484 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN9O95484 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN9O95484 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CLDN9O95484 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 DUSP5P2-201ENST00000426873 1033 ntBASIC19.1■□□□□ 0.65
CLDN9O95484 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.1■□□□□ 0.65
CLDN9O95484 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 AC092118.2-201ENST00000613495 667 ntBASIC19.1■□□□□ 0.65
CLDN9O95484 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN9O95484 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN9O95484 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 SLC29A4P1-201ENST00000398760 971 ntBASIC19.09■□□□□ 0.65
CLDN9O95484 AL390719.1-204ENST00000412397 1219 ntBASIC19.09■□□□□ 0.65
CLDN9O95484 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CLDN9O95484 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.09■□□□□ 0.65
CLDN9O95484 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.09■□□□□ 0.65
CLDN9O95484 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.09■□□□□ 0.65
CLDN9O95484 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.09■□□□□ 0.65
CLDN9O95484 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN9O95484 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN9O95484 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN9O95484 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CLDN9O95484 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN9O95484 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.08■□□□□ 0.65
CLDN9O95484 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN9O95484 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN9O95484 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.08■□□□□ 0.65
CLDN9O95484 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CLDN9O95484 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN9O95484 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.08■□□□□ 0.64
CLDN9O95484 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN9O95484 NCF1B-203ENST00000435988 1254 ntBASIC19.08■□□□□ 0.64
CLDN9O95484 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.08■□□□□ 0.64
CLDN9O95484 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN9O95484 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.08■□□□□ 0.64
CLDN9O95484 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN9O95484 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.08■□□□□ 0.64
CLDN9O95484 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.08■□□□□ 0.64
CLDN9O95484 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CLDN9O95484 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
CLDN9O95484 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CLDN9O95484 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.08■□□□□ 0.64
CLDN9O95484 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.08■□□□□ 0.64
CLDN9O95484 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CLDN9O95484 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN9O95484 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CLDN9O95484 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
CLDN9O95484 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
CLDN9O95484 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms