Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.92■□□□□ 0.62
SEMA3DO95025 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.92■□□□□ 0.62
SEMA3DO95025 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.91■□□□□ 0.62
SEMA3DO95025 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.91■□□□□ 0.62
SEMA3DO95025 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SEMA3DO95025 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SEMA3DO95025 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SEMA3DO95025 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.91■□□□□ 0.62
SEMA3DO95025 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.91■□□□□ 0.62
SEMA3DO95025 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SEMA3DO95025 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 AL138781.1-201ENST00000566567 1274 ntBASIC18.91■□□□□ 0.62
SEMA3DO95025 AC142086.2-201ENST00000569753 217 ntBASIC18.91■□□□□ 0.62
SEMA3DO95025 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.91■□□□□ 0.62
SEMA3DO95025 AC104771.1-201ENST00000603335 964 ntBASIC18.91■□□□□ 0.62
SEMA3DO95025 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 HLA-B-256ENST00000639848 1089 ntBASIC18.91■□□□□ 0.62
SEMA3DO95025 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.91■□□□□ 0.62
SEMA3DO95025 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SEMA3DO95025 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SEMA3DO95025 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SEMA3DO95025 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.9■□□□□ 0.62
SEMA3DO95025 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
SEMA3DO95025 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.9■□□□□ 0.62
SEMA3DO95025 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.9■□□□□ 0.62
SEMA3DO95025 AC133041.1-202ENST00000642053 222 ntBASIC18.9■□□□□ 0.62
SEMA3DO95025 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.9■□□□□ 0.62
SEMA3DO95025 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SEMA3DO95025 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.9■□□□□ 0.62
SEMA3DO95025 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.9■□□□□ 0.62
SEMA3DO95025 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SEMA3DO95025 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SEMA3DO95025 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
SEMA3DO95025 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
SEMA3DO95025 AC125437.2-201ENST00000625180 2167 ntBASIC18.89■□□□□ 0.62
SEMA3DO95025 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SEMA3DO95025 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SEMA3DO95025 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.89■□□□□ 0.61
SEMA3DO95025 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 AC069152.1-201ENST00000438030 544 ntBASIC18.89■□□□□ 0.61
SEMA3DO95025 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SEMA3DO95025 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SEMA3DO95025 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SEMA3DO95025 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.88■□□□□ 0.61
SEMA3DO95025 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 AC116351.2-201ENST00000606540 1585 ntBASIC18.88■□□□□ 0.61
SEMA3DO95025 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.88■□□□□ 0.61
SEMA3DO95025 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SEMA3DO95025 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms