Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 PTBP1P-201ENST00000554374 1601 ntBASIC17.35■□□□□ 0.37
LMX1BO60663 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1BO60663 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1BO60663 TREX1-205ENST00000625293 1783 ntBASIC17.35■□□□□ 0.37
LMX1BO60663 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LMX1BO60663 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.34■□□□□ 0.37
LMX1BO60663 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.34■□□□□ 0.37
LMX1BO60663 PGM5P4-201ENST00000421970 445 ntBASIC17.34■□□□□ 0.37
LMX1BO60663 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.34■□□□□ 0.37
LMX1BO60663 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.34■□□□□ 0.37
LMX1BO60663 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LMX1BO60663 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LMX1BO60663 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.34■□□□□ 0.37
LMX1BO60663 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.34■□□□□ 0.37
LMX1BO60663 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1BO60663 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.34■□□□□ 0.37
LMX1BO60663 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LMX1BO60663 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1BO60663 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
LMX1BO60663 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1BO60663 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1BO60663 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.33■□□□□ 0.37
LMX1BO60663 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.33■□□□□ 0.37
LMX1BO60663 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1BO60663 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LMX1BO60663 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
LMX1BO60663 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LMX1BO60663 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.33■□□□□ 0.36
LMX1BO60663 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
LMX1BO60663 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.33■□□□□ 0.36
LMX1BO60663 AL162412.1-201ENST00000567129 965 ntBASIC17.33■□□□□ 0.36
LMX1BO60663 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LMX1BO60663 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 AC098818.2-201ENST00000564925 2320 ntBASIC17.33■□□□□ 0.36
LMX1BO60663 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.33■□□□□ 0.36
LMX1BO60663 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LMX1BO60663 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LMX1BO60663 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.33■□□□□ 0.36
LMX1BO60663 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.33■□□□□ 0.36
LMX1BO60663 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 AC010980.2-201ENST00000587099 1412 ntBASIC17.32■□□□□ 0.36
LMX1BO60663 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
LMX1BO60663 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.32■□□□□ 0.36
LMX1BO60663 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LMX1BO60663 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.32■□□□□ 0.36
LMX1BO60663 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.32■□□□□ 0.36
LMX1BO60663 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
LMX1BO60663 AC128676.1-201ENST00000454392 318 ntBASIC17.32■□□□□ 0.36
LMX1BO60663 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.32■□□□□ 0.36
LMX1BO60663 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.32■□□□□ 0.36
LMX1BO60663 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LMX1BO60663 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LMX1BO60663 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.32■□□□□ 0.36
LMX1BO60663 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LMX1BO60663 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LMX1BO60663 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1BO60663 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms