Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.61■■□□□ 1.05
CLDN3O15551 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.61■■□□□ 1.05
CLDN3O15551 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 KRASP1-201ENST00000407852 552 ntBASIC21.61■■□□□ 1.05
CLDN3O15551 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
CLDN3O15551 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.61■■□□□ 1.05
CLDN3O15551 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CLDN3O15551 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
CLDN3O15551 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 AL691432.2-201ENST00000607222 2038 ntBASIC21.61■■□□□ 1.05
CLDN3O15551 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CLDN3O15551 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLDN3O15551 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CLDN3O15551 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CLDN3O15551 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.6■■□□□ 1.05
CLDN3O15551 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.6■■□□□ 1.05
CLDN3O15551 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CLDN3O15551 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.6■■□□□ 1.05
CLDN3O15551 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.6■■□□□ 1.05
CLDN3O15551 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.6■■□□□ 1.05
CLDN3O15551 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 TFP1-202ENST00000475455 1573 ntBASIC21.6■■□□□ 1.05
CLDN3O15551 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
CLDN3O15551 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLDN3O15551 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.59■■□□□ 1.05
CLDN3O15551 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.59■■□□□ 1.05
CLDN3O15551 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 UBE2SP1-201ENST00000450587 669 ntBASIC21.59■■□□□ 1.05
CLDN3O15551 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.59■■□□□ 1.05
CLDN3O15551 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.59■■□□□ 1.05
CLDN3O15551 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.59■■□□□ 1.05
CLDN3O15551 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.59■■□□□ 1.05
CLDN3O15551 AC110285.5-201ENST00000611501 352 ntBASIC21.59■■□□□ 1.05
CLDN3O15551 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.59■■□□□ 1.05
CLDN3O15551 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.59■■□□□ 1.05
CLDN3O15551 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLDN3O15551 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.59■■□□□ 1.05
CLDN3O15551 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CLDN3O15551 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CLDN3O15551 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.58■■□□□ 1.05
CLDN3O15551 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.58■■□□□ 1.05
CLDN3O15551 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.58■■□□□ 1.05
CLDN3O15551 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.58■■□□□ 1.05
CLDN3O15551 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLDN3O15551 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
CLDN3O15551 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.58■■□□□ 1.04
CLDN3O15551 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLDN3O15551 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.58■■□□□ 1.04
CLDN3O15551 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
CLDN3O15551 NBPF21P-201ENST00000425093 1451 ntBASIC21.58■■□□□ 1.04
CLDN3O15551 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.57■■□□□ 1.04
CLDN3O15551 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.57■■□□□ 1.04
CLDN3O15551 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CLDN3O15551 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLDN3O15551 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLDN3O15551 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms