Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 SNORA78-201ENST00000459373 127 ntBASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC26.63■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ABHD17AP6-201ENST00000458502 1044 ntBASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 BX119927.1-201ENST00000636596 1552 ntBASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RCN1P1-201ENST00000400413 996 ntBASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AL512625.2-201ENST00000417533 625 ntBASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TPM4P1-201ENST00000436100 807 ntBASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC26.6■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 PWWP2AP1-201ENST00000429776 2273 ntBASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AC100791.3-201ENST00000617619 330 ntBASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 BX088651.1-201ENST00000540551 451 ntBASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms