Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
LRCH3Q96II8 PAX6-259ENST00000639916 2622 ntAPPRIS ALT1 TSL 1 (best) BASIC8.81□□□□□ -1
LRCH3Q96II8 LINC01133-203ENST00000635112 1996 ntTSL 5 BASIC8.81□□□□□ -1
LRCH3Q96II8 CNTNAP4-202ENST00000377504 4723 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 FMOD-201ENST00000354955 3310 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 RASA2-201ENST00000286364 5614 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 SPATA31E3P-201ENST00000613133 4214 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 DHRS9-206ENST00000436483 1817 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 MTHFD1L-212ENST00000618312 3159 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 CEP192-202ENST00000430049 3286 ntTSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 MATN2-208ENST00000520016 3495 ntAPPRIS P4 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 PBRM1-208ENST00000410007 4905 ntTSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 LRRC37A11P-201ENST00000425901 3580 ntTSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 AC096642.1-201ENST00000612055 2614 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 SERPINA1-208ENST00000448921 3532 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 OR7A17-201ENST00000327462 1127 ntAPPRIS P1 BASIC8.8□□□□□ -1
LRCH3Q96II8 Y_RNA.72-201ENST00000362894 103 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 Y_RNA.146-201ENST00000363549 102 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 CYCSP45-201ENST00000402289 315 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 EEF1GP6-201ENST00000402309 905 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 GSTA9P-201ENST00000406231 611 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 RNU2-47P-201ENST00000410649 186 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 MICG-208ENST00000416822 132 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 LINCMD1-201ENST00000418518 462 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC8.8□□□□□ -1
LRCH3Q96II8 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC8.8□□□□□ -1
LRCH3Q96II8 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC8.8□□□□□ -1
LRCH3Q96II8 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC8.8□□□□□ -1
LRCH3Q96II8 WDR82P1-201ENST00000439836 939 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 RPL23AP35-201ENST00000451906 501 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 LINC01007-203ENST00000451953 579 ntTSL 4 BASIC8.8□□□□□ -1
LRCH3Q96II8 AL121877.1-201ENST00000453704 622 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AL606490.6-201ENST00000453735 523 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 DHFRP3-201ENST00000455595 559 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 RPS3AP14-201ENST00000483907 780 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 RN7SL635P-201ENST00000492123 296 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 EIF3LP3-201ENST00000495197 822 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC8.8□□□□□ -1
LRCH3Q96II8 OR4C2P-201ENST00000530855 1064 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 OR7E161P-201ENST00000533722 967 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AC037471.2-201ENST00000564941 598 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC8.8□□□□□ -1
LRCH3Q96II8 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 MIR4503-201ENST00000582187 83 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AC007448.1-201ENST00000582714 234 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 AC008770.1-206ENST00000589551 523 ntTSL 3 BASIC8.8□□□□□ -1
LRCH3Q96II8 AP001542.2-201ENST00000593141 364 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AC004257.1-201ENST00000593588 277 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 OR7E94P-202ENST00000601375 790 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AC010385.2-201ENST00000603743 490 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 MEMO1P5-201ENST00000604810 406 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 NOS1-203ENST00000344089 4340 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 SOX9-AS1-217ENST00000623935 1563 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC8.8□□□□□ -1
LRCH3Q96II8 LRRC4C-204ENST00000530763 2669 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 PIGA-201ENST00000333590 3652 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC8.8□□□□□ -1
LRCH3Q96II8 GINS1-201ENST00000262460 3249 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 SP140L-201ENST00000243810 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 LNP1-203ENST00000489752 1813 ntTSL 5 BASIC8.8□□□□□ -1
LRCH3Q96II8 ICE2P1-201ENST00000512800 1849 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC8.8□□□□□ -1
LRCH3Q96II8 AC122688.4-201ENST00000623279 4394 ntBASIC8.8□□□□□ -1
LRCH3Q96II8 SLFN13-211ENST00000542635 5921 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 PREPL-208ENST00000410081 3080 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
LRCH3Q96II8 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC8.79□□□□□ -1
LRCH3Q96II8 UACA-203ENST00000539319 4026 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC8.79□□□□□ -1
LRCH3Q96II8 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC8.79□□□□□ -1
LRCH3Q96II8 EIF4BP4-201ENST00000441847 1780 ntBASIC8.79□□□□□ -1
LRCH3Q96II8 CPB1-208ENST00000491148 1773 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
LRCH3Q96II8 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 IKZF3-207ENST00000377944 1669 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 IKZF3-208ENST00000377945 1696 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 IL2RA-202ENST00000379954 1562 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 CEACAM8-201ENST00000244336 2305 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 LARP1BP1-201ENST00000506036 1359 ntBASIC8.79□□□□□ -1
LRCH3Q96II8 EEF1A1P20-201ENST00000514852 1386 ntBASIC8.79□□□□□ -1
LRCH3Q96II8 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC8.79□□□□□ -1
LRCH3Q96II8 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
LRCH3Q96II8 RNU6-196P-201ENST00000384315 107 ntBASIC8.79□□□□□ -1
LRCH3Q96II8 MIR551B-201ENST00000384984 96 ntBASIC8.79□□□□□ -1
LRCH3Q96II8 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC8.79□□□□□ -1
LRCH3Q96II8 ISY1-202ENST00000393292 988 ntTSL 5 BASIC8.79□□□□□ -1
LRCH3Q96II8 LARP1P1-201ENST00000407692 292 ntBASIC8.79□□□□□ -1
LRCH3Q96II8 MIR548P-201ENST00000408336 84 ntBASIC8.79□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms