RNA–Protein interactions for RNA: ENST00000370138.1

LRRC39-203, Transcript of leucine rich repeat containing 39, humanhuman

TSL 5 BASIC

Gene LRRC39, Length 1,466 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39-203ENST00000370138 AEBP2Q6ZN18 517 aaPredicted RBP21.93■■□□□ 1.1
LRRC39-203ENST00000370138 CHIC1Q5VXU3 224 aa20.93■□□□□ 0.94
LRRC39-203ENST00000370138 SENP3Q9H4L4 574 aaPredicted RBP18.58■□□□□ 0.57
LRRC39-203ENST00000370138 POTEDQ86YR6 584 aa18.49■□□□□ 0.55
LRRC39-203ENST00000370138 PHF23Q9BUL5 403 aaPredicted RBP18.41■□□□□ 0.54
LRRC39-203ENST00000370138 FOXD1Q16676 465 aa17.44■□□□□ 0.38
LRRC39-203ENST00000370138 MSH5O43196 834 aa16.84■□□□□ 0.29
LRRC39-203ENST00000370138 PLPPR3Q6T4P5 718 aa16.76■□□□□ 0.27
LRRC39-203ENST00000370138 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
LRRC39-203ENST00000370138 ADRA2BP18089 450 aa16.34■□□□□ 0.21
LRRC39-203ENST00000370138 PIAS4Q8N2W9 510 aaPredicted RBP16.23■□□□□ 0.19
LRRC39-203ENST00000370138 CACNB1Q02641 598 aaPredicted RBP15.15■□□□□ 0.02
LRRC39-203ENST00000370138 MAPK8IP2Q13387 824 aaPredicted RBP14.98□□□□□ -0.01
LRRC39-203ENST00000370138 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
LRRC39-203ENST00000370138 DMRT2Q9Y5R5 561 aa14.79□□□□□ -0.04
LRRC39-203ENST00000370138 PPP4R3CPQ6ZMV5 832 aa14.75□□□□□ -0.05
LRRC39-203ENST00000370138 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
LRRC39-203ENST00000370138 HOXD11P31277 338 aaPredicted RBP14.31□□□□□ -0.12
LRRC39-203ENST00000370138 POTEHQ6S545 545 aa14.25□□□□□ -0.13
LRRC39-203ENST00000370138 RNF39Q9H2S5 420 aa14.24□□□□□ -0.13
LRRC39-203ENST00000370138 RNF216Q9NWF9 866 aaPredicted RBP14.23□□□□□ -0.13
LRRC39-203ENST00000370138 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
LRRC39-203ENST00000370138 NCBP3Q53F19 620 aaKnown RBP14.17□□□□□ -0.14
LRRC39-203ENST00000370138 NPM3O75607 178 aaKnown RBP14.04□□□□□ -0.16
LRRC39-203ENST00000370138 C1QBPQ07021 282 aaKnown RBP13.99□□□□□ -0.17
LRRC39-203ENST00000370138 KCNA4P22459 653 aa13.95□□□□□ -0.18
LRRC39-203ENST00000370138 DNAJC5BQ9UF47 199 aa13.73□□□□□ -0.21
LRRC39-203ENST00000370138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.62□□□□□ -0.23
LRRC39-203ENST00000370138 U3KPZ7 1027 aaPredicted RBP13.4□□□□□ -0.26
LRRC39-203ENST00000370138 SLC4A2P04920 1241 aa13.39□□□□□ -0.27
LRRC39-203ENST00000370138 SPINK5Q9NQ38 1064 aaPredicted RBP13.16□□□□□ -0.3
LRRC39-203ENST00000370138 SLC4A1APQ9BWU0 796 aaKnown RBP13.16□□□□□ -0.3
LRRC39-203ENST00000370138 CAPN15O75808 1086 aa13.09□□□□□ -0.31
LRRC39-203ENST00000370138 DSG3P32926 999 aa12.99□□□□□ -0.33
LRRC39-203ENST00000370138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.97□□□□□ -0.33
LRRC39-203ENST00000370138 HNRNPUL2Q1KMD3 747 aaKnown RBP12.97□□□□□ -0.33
LRRC39-203ENST00000370138 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
LRRC39-203ENST00000370138 MYCNP04198 464 aaPredicted RBP12.93□□□□□ -0.34
LRRC39-203ENST00000370138 TRHP20396 242 aaPredicted RBP12.93□□□□□ -0.34
LRRC39-203ENST00000370138 APLP2Q06481 763 aa12.91□□□□□ -0.34
LRRC39-203ENST00000370138 FOXD4L1Q9NU39 408 aa12.91□□□□□ -0.34
LRRC39-203ENST00000370138 ZNF219Q9P2Y4 722 aaPredicted RBP12.87□□□□□ -0.35
LRRC39-203ENST00000370138 ZBTB22O15209 634 aa12.85□□□□□ -0.35
LRRC39-203ENST00000370138 ABCB7O75027 752 aa12.85□□□□□ -0.35
LRRC39-203ENST00000370138 SP7Q8TDD2 431 aaPredicted RBP12.78□□□□□ -0.36
LRRC39-203ENST00000370138 ATF5Q9Y2D1 282 aaPredicted RBP12.72□□□□□ -0.37
LRRC39-203ENST00000370138 POLA2Q14181 598 aa12.63□□□□□ -0.39
LRRC39-203ENST00000370138 CHRDL2Q6WN34 429 aa12.56□□□□□ -0.4
LRRC39-203ENST00000370138 ATXN8OSP0DMR3 200 aa12.46□□□□□ -0.42
LRRC39-203ENST00000370138 CSRNP3Q8WYN3 585 aa12.39□□□□□ -0.43
LRRC39-203ENST00000370138 RBM42Q9BTD8 480 aaKnown RBP12.38□□□□□ -0.43
LRRC39-203ENST00000370138 EHMT2Q96KQ7 1210 aa12.32□□□□□ -0.44
LRRC39-203ENST00000370138 ZBTB12Q9Y330 459 aaPredicted RBP12.3□□□□□ -0.44
LRRC39-203ENST00000370138 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
LRRC39-203ENST00000370138 PLSCR2Q9NRY7 297 aa12.21□□□□□ -0.46
LRRC39-203ENST00000370138 MKRN4PQ13434 485 aaPredicted RBP12.13□□□□□ -0.47
LRRC39-203ENST00000370138 FBLN2P98095 1184 aa12.1□□□□□ -0.47
LRRC39-203ENST00000370138 AKT1S1Q96B36 256 aa12.1□□□□□ -0.47
LRRC39-203ENST00000370138 HAX1O00165 279 aa12.09□□□□□ -0.47
LRRC39-203ENST00000370138 REM2Q8IYK8 340 aaPredicted RBP12.02□□□□□ -0.48
LRRC39-203ENST00000370138 PIP4P2Q8N4L2 257 aa12□□□□□ -0.49
LRRC39-203ENST00000370138 SPDYE2BA6NHP3 402 aa11.98□□□□□ -0.49
LRRC39-203ENST00000370138 SPDYE6P0CI01 402 aa11.98□□□□□ -0.49
LRRC39-203ENST00000370138 SPDYE2Q495Y8 402 aa11.98□□□□□ -0.49
LRRC39-203ENST00000370138 LHX8Q68G74 356 aa11.97□□□□□ -0.49
LRRC39-203ENST00000370138 PITPNM1O00562 1244 aa11.9□□□□□ -0.5
LRRC39-203ENST00000370138 ZNF692Q9BU19 519 aaPredicted RBP11.88□□□□□ -0.51
LRRC39-203ENST00000370138 SSUH2Q9Y2M2 353 aa11.87□□□□□ -0.51
LRRC39-203ENST00000370138 EVX2Q03828 476 aa11.84□□□□□ -0.51
LRRC39-203ENST00000370138 FXR2P51116 673 aaKnown RBP eCLIP11.76□□□□□ -0.53
LRRC39-203ENST00000370138 CLEC11AQ9Y240 323 aa11.73□□□□□ -0.53
LRRC39-203ENST00000370138 PABPN1Q86U42 306 aaKnown RBP eCLIP11.72□□□□□ -0.53
LRRC39-203ENST00000370138 SPDYE1Q8NFV5 336 aaPredicted RBP11.72□□□□□ -0.53
LRRC39-203ENST00000370138 SPDYE4A6NLX3 237 aa11.59□□□□□ -0.55
LRRC39-203ENST00000370138 PRKAR2AP13861 404 aaKnown RBP11.58□□□□□ -0.56
LRRC39-203ENST00000370138 GABBR2O75899 941 aa11.54□□□□□ -0.56
LRRC39-203ENST00000370138 PRR29P0C7W0 189 aa11.54□□□□□ -0.56
LRRC39-203ENST00000370138 CHADLQ6NUI6 762 aa11.52□□□□□ -0.56
LRRC39-203ENST00000370138 C19orf67A6NJJ6 358 aa11.42□□□□□ -0.58
LRRC39-203ENST00000370138 STAG3Q9UJ98 1225 aa11.38□□□□□ -0.59
LRRC39-203ENST00000370138 PROM2Q8N271 834 aa11.35□□□□□ -0.59
LRRC39-203ENST00000370138 CREBZFQ9NS37 354 aa11.33□□□□□ -0.6
LRRC39-203ENST00000370138 FARP1Q9Y4F1 1045 aaPredicted RBP11.33□□□□□ -0.6
LRRC39-203ENST00000370138 POTEMA6NI47 508 aa11.32□□□□□ -0.6
LRRC39-203ENST00000370138 PCDH10Q9P2E7 1040 aa11.28□□□□□ -0.6
LRRC39-203ENST00000370138 POTEIP0CG38 1075 aa11.27□□□□□ -0.6
LRRC39-203ENST00000370138 POTEGQ6S5H5 508 aa11.25□□□□□ -0.61
LRRC39-203ENST00000370138 CD44P16070 742 aaKnown RBP11.23□□□□□ -0.61
LRRC39-203ENST00000370138 FKBP8Q14318 412 aa11.2□□□□□ -0.62
LRRC39-203ENST00000370138 MNX1P50219 401 aaPredicted RBP11.17□□□□□ -0.62
LRRC39-203ENST00000370138 OTUD5Q96G74 571 aa11.1□□□□□ -0.63
LRRC39-203ENST00000370138 ZRANB1Q9UGI0 708 aa11.09□□□□□ -0.63
LRRC39-203ENST00000370138 NPM1P06748 294 aaKnown RBP eCLIP11.06□□□□□ -0.64
LRRC39-203ENST00000370138 ZNF579Q8NAF0 562 aaKnown RBP11.05□□□□□ -0.64
LRRC39-203ENST00000370138 MIER1Q8N108 512 aa11.02□□□□□ -0.65
LRRC39-203ENST00000370138 CLCN6P51797 869 aa11.01□□□□□ -0.65
LRRC39-203ENST00000370138 PHF12Q96QT6 1004 aa10.99□□□□□ -0.65
LRRC39-203ENST00000370138 PAK3O75914 559 aaPredicted RBP10.98□□□□□ -0.65
LRRC39-203ENST00000370138 PLCD3Q8N3E9 789 aa10.96□□□□□ -0.65
LRRC39-203ENST00000370138 DCBLD2Q96PD2 775 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms