Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
SCAPERQ9BY12 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC9.17□□□□□ -0.94
SCAPERQ9BY12 CCDC162P-202ENST00000368966 6751 ntBASIC9.17□□□□□ -0.94
SCAPERQ9BY12 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
SCAPERQ9BY12 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 PABPC1P6-201ENST00000445594 1829 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 RNU105B-201ENST00000364478 208 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 RN7SKP59-201ENST00000410520 314 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 Y_RNA.625-201ENST00000411256 107 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 OR2AT2P-201ENST00000413438 905 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AC126120.1-201ENST00000431082 470 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AC007386.1-201ENST00000455212 582 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AC008953.1-201ENST00000497334 318 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 GAPDHP71-201ENST00000511530 1003 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 DPPA2P4-201ENST00000563717 878 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AC117409.1-201ENST00000470499 1310 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 AC092725.2-201ENST00000567658 1389 ntBASIC9.16□□□□□ -0.94
SCAPERQ9BY12 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
SCAPERQ9BY12 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 MRM2-202ENST00000407040 582 ntTSL 3 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 Z84478.1-201ENST00000438230 1219 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 LRRC37A14P-201ENST00000452297 462 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AC093166.4-201ENST00000457867 318 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 RN7SL72P-201ENST00000460697 269 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 BX510359.5-201ENST00000515651 304 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 OR4A46P-201ENST00000527255 933 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AC037198.3-201ENST00000616754 526 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AL450226.2-201ENST00000622913 439 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 CASC19-222ENST00000641321 1173 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 SAMMSON-227ENST00000642114 1199 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 HYDIN2-203ENST00000614586 13885 ntBASIC9.15□□□□□ -0.94
SCAPERQ9BY12 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 HLF-210ENST00000575345 3589 ntTSL 2 BASIC9.15□□□□□ -0.94
SCAPERQ9BY12 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
SCAPERQ9BY12 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
SCAPERQ9BY12 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.95
SCAPERQ9BY12 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
SCAPERQ9BY12 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC012075.1-201ENST00000436549 580 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC092967.1-201ENST00000449016 481 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC087565.3-203ENST00000641018 837 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 MAPK10-344ENST00000641718 3746 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC127024.8-201ENST00000623719 2094 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC110597.1-201ENST00000562669 3176 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms