Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC116651.1-201ENST00000609724 556 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AL445670.1-201ENST00000618889 801 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC107398.3-201ENST00000562284 7000 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 LINC02019-201ENST00000608605 2060 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 FO082842.1-201ENST00000423552 1370 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 RPS12P17-201ENST00000438591 377 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 RN7SL222P-201ENST00000476452 299 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 KCTD9P4-201ENST00000526766 1166 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AP005639.1-201ENST00000526939 192 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AL445222.1-201ENST00000607259 628 ntBASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC88AQ3V6T2 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 AC006455.6-201ENST00000426192 893 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 AC127526.2-201ENST00000426436 775 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 AC009784.1-201ENST00000426484 460 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 IGLV2-28-201ENST00000520681 304 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 ASB8-202ENST00000535055 657 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 AC104162.1-201ENST00000430831 2382 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 PDZK1P1-202ENST00000425209 1350 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 TNPO1P2-201ENST00000426249 2665 ntBASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 CAST-202ENST00000325674 3356 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC88AQ3V6T2 ATM-215ENST00000530958 5718 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC127070.3-201ENST00000503695 3263 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 SNORA64.1-201ENST00000362600 132 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 RN7SKP160-201ENST00000363804 340 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 OR2AT2P-201ENST00000413438 905 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC108693.1-201ENST00000496068 432 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 OR4A46P-201ENST00000527255 933 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC006530.1-201ENST00000555980 571 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 MIR7155-201ENST00000615925 56 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 WDR95P-201ENST00000425638 1542 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AL136531.3-201ENST00000624378 3658 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms