Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNORA70-201ENST00000384436 135 ntBASIC10.01□□□□□ -0.81
CUX1P39880 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC10.01□□□□□ -0.81
CUX1P39880 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC10.01□□□□□ -0.81
CUX1P39880 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC10.01□□□□□ -0.81
CUX1P39880 RN7SL222P-201ENST00000476452 299 ntBASIC10.01□□□□□ -0.81
CUX1P39880 NDUFA5P12-201ENST00000503796 343 ntBASIC10.01□□□□□ -0.81
CUX1P39880 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC10.01□□□□□ -0.81
CUX1P39880 HMGB1P42-201ENST00000532126 553 ntBASIC10.01□□□□□ -0.81
CUX1P39880 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC10.01□□□□□ -0.81
CUX1P39880 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC10.01□□□□□ -0.81
CUX1P39880 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CUX1P39880 AL359513.1-201ENST00000614364 557 ntBASIC10.01□□□□□ -0.81
CUX1P39880 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CUX1P39880 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC10.01□□□□□ -0.81
CUX1P39880 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.81
CUX1P39880 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
CUX1P39880 FO082842.1-201ENST00000423552 1370 ntBASIC10□□□□□ -0.81
CUX1P39880 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC10□□□□□ -0.81
CUX1P39880 RANP1-206ENST00000455094 651 ntBASIC10□□□□□ -0.81
CUX1P39880 AC004815.1-201ENST00000484185 331 ntBASIC10□□□□□ -0.81
CUX1P39880 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC10□□□□□ -0.81
CUX1P39880 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC10□□□□□ -0.81
CUX1P39880 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
CUX1P39880 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 UGT2B27P-201ENST00000505092 1620 ntBASIC10□□□□□ -0.81
CUX1P39880 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
CUX1P39880 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC10□□□□□ -0.81
CUX1P39880 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC10□□□□□ -0.81
CUX1P39880 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.81
CUX1P39880 AC009166.2-201ENST00000624410 2833 ntBASIC10□□□□□ -0.81
CUX1P39880 AL136531.3-201ENST00000624378 3658 ntBASIC10□□□□□ -0.81
CUX1P39880 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC10□□□□□ -0.81
CUX1P39880 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CUX1P39880 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC9.99□□□□□ -0.81
CUX1P39880 AC016583.1-201ENST00000624221 2431 ntBASIC9.99□□□□□ -0.81
CUX1P39880 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
CUX1P39880 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CUX1P39880 TNPO1P1-201ENST00000423641 1138 ntBASIC9.99□□□□□ -0.81
CUX1P39880 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC9.99□□□□□ -0.81
CUX1P39880 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC9.99□□□□□ -0.81
CUX1P39880 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC9.99□□□□□ -0.81
CUX1P39880 YES1P1-201ENST00000418510 1628 ntBASIC9.99□□□□□ -0.81
CUX1P39880 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC9.99□□□□□ -0.81
CUX1P39880 AC011369.2-201ENST00000624423 1567 ntBASIC9.99□□□□□ -0.81
CUX1P39880 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
CUX1P39880 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC9.99□□□□□ -0.81
CUX1P39880 SALL4P7-201ENST00000555779 3120 ntBASIC9.99□□□□□ -0.81
CUX1P39880 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
CUX1P39880 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC9.99□□□□□ -0.81
CUX1P39880 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
CUX1P39880 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC9.98□□□□□ -0.81
CUX1P39880 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC9.98□□□□□ -0.81
CUX1P39880 RNA5SP92-201ENST00000516437 110 ntBASIC9.98□□□□□ -0.81
CUX1P39880 IGLV2-28-201ENST00000520681 304 ntBASIC9.98□□□□□ -0.81
CUX1P39880 MIR5095-201ENST00000578844 88 ntBASIC9.98□□□□□ -0.81
CUX1P39880 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC9.98□□□□□ -0.81
CUX1P39880 CASC19-222ENST00000641321 1173 ntBASIC9.98□□□□□ -0.81
CUX1P39880 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
CUX1P39880 SRRM1P3-201ENST00000426911 2678 ntBASIC9.98□□□□□ -0.81
CUX1P39880 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC9.98□□□□□ -0.81
CUX1P39880 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC9.98□□□□□ -0.81
CUX1P39880 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 AC092725.2-201ENST00000567658 1389 ntBASIC9.98□□□□□ -0.81
CUX1P39880 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CUX1P39880 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CUX1P39880 RN7SKP166-201ENST00000410812 305 ntBASIC9.97□□□□□ -0.81
CUX1P39880 RN7SKP273-201ENST00000411392 314 ntBASIC9.97□□□□□ -0.81
CUX1P39880 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 AC099677.3-201ENST00000427081 395 ntBASIC9.97□□□□□ -0.81
CUX1P39880 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC9.97□□□□□ -0.81
CUX1P39880 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CUX1P39880 AC009120.1-201ENST00000493458 473 ntBASIC9.97□□□□□ -0.81
CUX1P39880 AC024558.1-201ENST00000505008 528 ntBASIC9.97□□□□□ -0.81
CUX1P39880 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CUX1P39880 BX510359.5-201ENST00000515651 304 ntBASIC9.97□□□□□ -0.81
CUX1P39880 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC9.97□□□□□ -0.81
CUX1P39880 SAMMSON-227ENST00000642114 1199 ntBASIC9.97□□□□□ -0.81
CUX1P39880 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CUX1P39880 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
CUX1P39880 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
CUX1P39880 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms