Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
FOXN3O00409 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
FOXN3O00409 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
FOXN3O00409 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
FOXN3O00409 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
FOXN3O00409 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.88□□□□□ -1.31
FOXN3O00409 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
FOXN3O00409 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 BIN2P1-201ENST00000504996 1530 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 SNORA27.3-201ENST00000364937 134 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 ARSFP1-201ENST00000398758 477 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 UBE2V1P15-201ENST00000407776 448 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.87□□□□□ -1.31
FOXN3O00409 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 RPS6P14-201ENST00000425165 719 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 GAPDHP75-201ENST00000433910 943 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AL590399.4-201ENST00000436561 601 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 RPS19P6-201ENST00000441327 433 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 NPM1P9-201ENST00000453156 844 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 RPL31P11-202ENST00000454082 372 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.87□□□□□ -1.31
FOXN3O00409 AC104849.1-201ENST00000462623 405 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC022730.1-201ENST00000473114 568 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 FTH1P8-201ENST00000498161 514 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 SETP12-201ENST00000514068 805 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC117525.1-201ENST00000515228 503 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 SEC11B-201ENST00000518383 499 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC131935.1-201ENST00000524621 333 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 OR4V1P-201ENST00000525394 1140 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 AC006518.1-201ENST00000541449 943 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.87□□□□□ -1.31
FOXN3O00409 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 AL136520.1-202ENST00000555494 763 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.87□□□□□ -1.31
FOXN3O00409 AC244034.2-201ENST00000562504 509 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC027281.1-201ENST00000574178 758 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC027796.1-201ENST00000575593 512 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC233702.7-202ENST00000582941 211 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.87□□□□□ -1.31
FOXN3O00409 AC040174.2-201ENST00000602701 465 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 OR4H6P-202ENST00000603819 340 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 AL591222.2-201ENST00000604443 754 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 AL008723.3-201ENST00000608926 449 ntBASIC6.87□□□□□ -1.31
FOXN3O00409 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.87□□□□□ -1.31
FOXN3O00409 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
FOXN3O00409 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
FOXN3O00409 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.86□□□□□ -1.31
FOXN3O00409 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
FOXN3O00409 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
FOXN3O00409 AC068446.1-201ENST00000556425 1549 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 Z93929.1-201ENST00000418200 1475 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AC009779.8-201ENST00000641684 4384 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
FOXN3O00409 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
FOXN3O00409 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
FOXN3O00409 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
FOXN3O00409 RNA5SP85-201ENST00000365378 119 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 RNU1-84P-201ENST00000365447 164 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.86□□□□□ -1.31
FOXN3O00409 AP003170.5-201ENST00000397185 335 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 MIR1266-201ENST00000408125 84 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 RAB9AP4-201ENST00000415230 609 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6.86□□□□□ -1.31
FOXN3O00409 CYP4F30P-202ENST00000420048 405 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AC007568.1-201ENST00000422912 471 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AC017019.1-201ENST00000426129 261 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.86□□□□□ -1.31
FOXN3O00409 GAPDHP37-201ENST00000442317 968 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AC092967.1-201ENST00000449016 481 ntBASIC6.86□□□□□ -1.31
FOXN3O00409 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.86□□□□□ -1.31
FOXN3O00409 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.86□□□□□ -1.31
FOXN3O00409 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms