RNA–Protein interactions for RNA: ENST00000320122.10

LMO3-202, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-202ENST00000320122 NISCHQ9Y2I1 1504 aa12.47□□□□□ -0.41
LMO3-202ENST00000320122 DCAF8L2P0C7V8 631 aa10.74□□□□□ -0.69
LMO3-202ENST00000320122 SUPT5HO00267 1087 aaKnown RBP10.65□□□□□ -0.7
LMO3-202ENST00000320122 SHROOM4Q9ULL8 1493 aa10.65□□□□□ -0.7
LMO3-202ENST00000320122 CCDC180Q9P1Z9 1646 aa10.59□□□□□ -0.71
LMO3-202ENST00000320122 ZCCHC6Q5VYS8 1495 aaKnown RBP10.58□□□□□ -0.72
LMO3-202ENST00000320122 HRCP23327 699 aa10.56□□□□□ -0.72
LMO3-202ENST00000320122 CHIC1Q5VXU3 224 aa10.45□□□□□ -0.74
LMO3-202ENST00000320122 DCAF1Q9Y4B6 1507 aa10.38□□□□□ -0.75
LMO3-202ENST00000320122 ZEB1P37275 1124 aaPredicted RBP10.36□□□□□ -0.75
LMO3-202ENST00000320122 PCGF6Q9BYE7 350 aa10.35□□□□□ -0.75
LMO3-202ENST00000320122 PELP1Q8IZL8 1130 aaKnown RBP10.33□□□□□ -0.76
LMO3-202ENST00000320122 TRIM26Q12899 539 aaPredicted RBP10.26□□□□□ -0.77
LMO3-202ENST00000320122 MYO15BQ96JP2 1530 aa10.23□□□□□ -0.77
LMO3-202ENST00000320122 ABCC9O60706 1549 aa10.23□□□□□ -0.77
LMO3-202ENST00000320122 MYT1Q01538 1121 aa10.2□□□□□ -0.78
LMO3-202ENST00000320122 PPARGC1BQ86YN6 1023 aaKnown RBP10.03□□□□□ -0.8
LMO3-202ENST00000320122 TRIM41Q8WV44 630 aa10.03□□□□□ -0.8
LMO3-202ENST00000320122 LOC105371045A0A1W2PR82 267 aa10.02□□□□□ -0.81
LMO3-202ENST00000320122 RB1CC1Q8TDY2 1594 aa9.92□□□□□ -0.82
LMO3-202ENST00000320122 RSF1Q96T23 1441 aaPredicted RBP9.91□□□□□ -0.82
LMO3-202ENST00000320122 CENPBP07199 599 aaPredicted RBP9.91□□□□□ -0.82
LMO3-202ENST00000320122 PABPN1Q86U42 306 aaKnown RBP eCLIP9.87□□□□□ -0.83
LMO3-202ENST00000320122 SCRIBQ14160 1630 aa9.8□□□□□ -0.84
LMO3-202ENST00000320122 FAM9AQ8IZU1 332 aaPredicted RBP9.8□□□□□ -0.84
LMO3-202ENST00000320122 CCER1Q8TC90 406 aaPredicted RBP9.8□□□□□ -0.84
LMO3-202ENST00000320122 NACADO15069 1562 aa9.79□□□□□ -0.84
LMO3-202ENST00000320122 ACIN1Q9UKV3 1341 aaKnown RBP9.74□□□□□ -0.85
LMO3-202ENST00000320122 SCAF1Q9H7N4 1312 aaKnown RBP9.71□□□□□ -0.85
LMO3-202ENST00000320122 EEA1Q15075 1411 aa9.71□□□□□ -0.85
LMO3-202ENST00000320122 DIEXFQ68CQ4 756 aaKnown RBP9.69□□□□□ -0.86
LMO3-202ENST00000320122 WRNQ14191 1432 aaPredicted RBP eCLIP9.67□□□□□ -0.86
LMO3-202ENST00000320122 BAZ1AQ9NRL2 1556 aaPredicted RBP9.65□□□□□ -0.86
LMO3-202ENST00000320122 CLSPNQ9HAW4 1339 aa9.62□□□□□ -0.87
LMO3-202ENST00000320122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.62□□□□□ -0.87
LMO3-202ENST00000320122 TNIKQ9UKE5 1360 aa9.61□□□□□ -0.87
LMO3-202ENST00000320122 ZNF316A6NFI3 1004 aaPredicted RBP9.6□□□□□ -0.87
LMO3-202ENST00000320122 MROH2BQ7Z745 1585 aa9.6□□□□□ -0.87
LMO3-202ENST00000320122 EHMT2Q96KQ7 1210 aa9.6□□□□□ -0.87
LMO3-202ENST00000320122 APLP2Q06481 763 aa9.59□□□□□ -0.87
LMO3-202ENST00000320122 GTF3C3Q9Y5Q9 886 aa9.57□□□□□ -0.88
LMO3-202ENST00000320122 CECR2Q9BXF3 1484 aa9.57□□□□□ -0.88
LMO3-202ENST00000320122 CEP162Q5TB80 1403 aa9.56□□□□□ -0.88
LMO3-202ENST00000320122 NEUROD1Q13562 356 aa9.56□□□□□ -0.88
LMO3-202ENST00000320122 TOP2AP11388 1531 aaKnown RBP9.55□□□□□ -0.88
LMO3-202ENST00000320122 UBTFP17480 764 aaKnown RBP9.55□□□□□ -0.88
LMO3-202ENST00000320122 CSRNP3Q8WYN3 585 aa9.54□□□□□ -0.88
LMO3-202ENST00000320122 GOLGA3Q08378 1498 aa9.54□□□□□ -0.88
LMO3-202ENST00000320122 WIZO95785 1651 aa9.52□□□□□ -0.89
LMO3-202ENST00000320122 TTBK1Q5TCY1 1321 aaPredicted RBP9.52□□□□□ -0.89
LMO3-202ENST00000320122 EIF4G1Q04637 1599 aaKnown RBP9.48□□□□□ -0.89
LMO3-202ENST00000320122 CEP164Q9UPV0 1460 aa9.47□□□□□ -0.89
LMO3-202ENST00000320122 CCDC88BA6NC98 1476 aa9.44□□□□□ -0.9
LMO3-202ENST00000320122 SMARCA4P51532 1647 aa9.43□□□□□ -0.9
LMO3-202ENST00000320122 BAZ1BQ9UIG0 1483 aaKnown RBP9.42□□□□□ -0.9
LMO3-202ENST00000320122 SMARCA2P51531 1590 aa9.41□□□□□ -0.9
LMO3-202ENST00000320122 CLIP1P30622 1438 aa9.4□□□□□ -0.9
LMO3-202ENST00000320122 VPS8Q8N3P4 1428 aa9.38□□□□□ -0.91
LMO3-202ENST00000320122 KIF21BO75037 1637 aa9.38□□□□□ -0.91
LMO3-202ENST00000320122 ABCC8Q09428 1581 aa9.38□□□□□ -0.91
LMO3-202ENST00000320122 YTHDC1Q96MU7 727 aaKnown RBP9.38□□□□□ -0.91
LMO3-202ENST00000320122 DNAJC5BQ9UF47 199 aa9.38□□□□□ -0.91
LMO3-202ENST00000320122 SOGA1O94964 1423 aa9.37□□□□□ -0.91
LMO3-202ENST00000320122 ERICH6Q7L0X2 663 aa9.37□□□□□ -0.91
LMO3-202ENST00000320122 HNRNPUL2Q1KMD3 747 aaKnown RBP9.36□□□□□ -0.91
LMO3-202ENST00000320122 MIER1Q8N108 512 aa9.32□□□□□ -0.92
LMO3-202ENST00000320122 PEG3Q9GZU2 1588 aa9.28□□□□□ -0.92
LMO3-202ENST00000320122 NEFLP07196 543 aa9.25□□□□□ -0.93
LMO3-202ENST00000320122 ERICH3Q5RHP9 1530 aa9.24□□□□□ -0.93
LMO3-202ENST00000320122 RUSC2Q8N2Y8 1516 aa9.23□□□□□ -0.93
LMO3-202ENST00000320122 TIMELESSQ9UNS1 1208 aa9.21□□□□□ -0.94
LMO3-202ENST00000320122 DHX57Q6P158 1386 aaKnown RBP9.19□□□□□ -0.94
LMO3-202ENST00000320122 SYNJ1O43426 1573 aa9.18□□□□□ -0.94
LMO3-202ENST00000320122 KIF27Q86VH2 1401 aa9.18□□□□□ -0.94
LMO3-202ENST00000320122 RAPGEF2Q9Y4G8 1499 aa9.17□□□□□ -0.94
LMO3-202ENST00000320122 SUPT16HQ9Y5B9 1047 aaKnown RBP9.17□□□□□ -0.94
LMO3-202ENST00000320122 RRBP1Q9P2E9 1410 aaKnown RBP9.17□□□□□ -0.94
LMO3-202ENST00000320122 ATAD2BQ9ULI0 1458 aa9.16□□□□□ -0.94
LMO3-202ENST00000320122 TOP2BQ02880 1626 aa9.16□□□□□ -0.94
LMO3-202ENST00000320122 CCNB3Q8WWL7 1395 aa9.16□□□□□ -0.94
LMO3-202ENST00000320122 CUX2O14529 1486 aa9.15□□□□□ -0.94
LMO3-202ENST00000320122 PRXQ9BXM0 1461 aa9.13□□□□□ -0.95
LMO3-202ENST00000320122 ANP32EQ9BTT0 268 aa9.13□□□□□ -0.95
LMO3-202ENST00000320122 UNC13AQ9UPW8 1703 aa9.12□□□□□ -0.95
LMO3-202ENST00000320122 RANGAP1P46060 587 aaPredicted RBP9.12□□□□□ -0.95
LMO3-202ENST00000320122 MAP3K1Q13233 1512 aa9.11□□□□□ -0.95
LMO3-202ENST00000320122 BIVM-ERCC5R4GMW8 1640 aa9.11□□□□□ -0.95
LMO3-202ENST00000320122 CCER2I3L3R5 266 aa9.1□□□□□ -0.95
LMO3-202ENST00000320122 ANP32CO43423 234 aa9.1□□□□□ -0.95
LMO3-202ENST00000320122 MYT1LQ9UL68 1186 aa9.09□□□□□ -0.95
LMO3-202ENST00000320122 FHAD1B1AJZ9 1412 aa9.09□□□□□ -0.95
LMO3-202ENST00000320122 ARAP1Q96P48 1450 aa9.08□□□□□ -0.96
LMO3-202ENST00000320122 SETD5Q9C0A6 1442 aa9.07□□□□□ -0.96
LMO3-202ENST00000320122 BICRAQ9NZM4 1560 aa9.07□□□□□ -0.96
LMO3-202ENST00000320122 TSHZ2Q9NRE2 1034 aa9.05□□□□□ -0.96
LMO3-202ENST00000320122 HMGXB3Q12766 1538 aa9.04□□□□□ -0.96
LMO3-202ENST00000320122 ERICH6BQ5W0A0 696 aa9.03□□□□□ -0.96
LMO3-202ENST00000320122 RAB3GAP2Q9H2M9 1393 aa9.03□□□□□ -0.96
LMO3-202ENST00000320122 FBLN2P98095 1184 aa9.03□□□□□ -0.96
LMO3-202ENST00000320122 ITGAEP38570 1179 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms