Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 SNORD16-201ENST00000362803 99 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 RNU1-59P-201ENST00000364829 162 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 RNA5SP485-201ENST00000365053 119 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 SNORA64.3-201ENST00000365647 134 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AL034417.1-201ENST00000399343 800 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 U3.43-201ENST00000410734 213 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC007568.1-201ENST00000422912 471 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC125238.2-201ENST00000430003 1440 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC234771.2-201ENST00000445718 597 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 RPS18P1-201ENST00000447840 458 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC099670.1-201ENST00000455141 783 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC004890.1-201ENST00000461005 181 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC025470.1-201ENST00000510053 2032 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC106800.3-201ENST00000511389 308 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 RNA5SP418-201ENST00000515951 117 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC024651.2-201ENST00000562480 2098 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC063977.7-201ENST00000594454 337 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AL589765.6-201ENST00000601909 549 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AL137246.2-201ENST00000613439 662 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 U1.25-201ENST00000614085 162 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC024255.1-201ENST00000614376 102 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 HTR1DP1-201ENST00000616500 888 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 U1.34-201ENST00000618578 162 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 U1.31-201ENST00000620022 160 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC089999.3-201ENST00000622440 577 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC011369.2-201ENST00000624423 1567 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AL121839.2-201ENST00000565058 6943 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AC005725.1-201ENST00000577346 2607 ntBASIC5.61□□□□□ -1.51
SKA3Q8IX90 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 USP9YP3-201ENST00000434481 1766 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC092724.1-201ENST00000624623 3397 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC123769.1-201ENST00000530992 3192 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RN7SKP184-201ENST00000362348 333 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC003045.1-201ENST00000398779 713 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL133260.1-201ENST00000405720 405 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL360013.1-201ENST00000419031 858 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 Z82198.3-201ENST00000421145 199 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RPSAP41-201ENST00000439695 860 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 GTF2IP14-201ENST00000441415 586 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 COX4I1P2-201ENST00000447446 547 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 KF459542.1-201ENST00000450908 553 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC073476.1-201ENST00000452854 407 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC114982.2-201ENST00000461396 358 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 RN7SL39P-201ENST00000462264 297 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RN7SL612P-201ENST00000497704 295 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC090058.1-201ENST00000498788 435 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms