Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CCR3-208ENST00000545097 1786 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 USP46-207ENST00000508499 1419 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 WDR76-201ENST00000263795 3978 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 ATG16L1-204ENST00000392018 3313 ntTSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 ZNF774-202ENST00000379090 5613 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 LARGE-AS1-203ENST00000438159 2618 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 DCAF8L2-202ENST00000451261 2295 ntAPPRIS P1 TSL 4 BASIC8.7□□□□□ -1.02
COL9A1P20849 DHX9-201ENST00000367549 4240 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 MATN2-208ENST00000520016 3495 ntAPPRIS P4 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 ZNF322-202ENST00000456172 4718 ntAPPRIS P1 TSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 ZNF322-207ENST00000607204 4737 ntAPPRIS P1 TSL 4 BASIC8.7□□□□□ -1.02
COL9A1P20849 MTIF2-204ENST00000403721 2386 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 BLOC1S6-218ENST00000568816 4013 ntTSL 2 BASIC8.7□□□□□ -1.02
COL9A1P20849 MAP3K19-202ENST00000375844 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 SLC9A6-209ENST00000636347 4867 ntTSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 ZNF665-201ENST00000396424 4159 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
COL9A1P20849 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 RNU6-1322P-201ENST00000364309 107 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 EI24P3-201ENST00000399046 1062 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 RPL5P18-201ENST00000406671 891 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 Y_RNA.605-201ENST00000410577 105 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 HMGB1P11-201ENST00000413899 637 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 DSTNP5-201ENST00000427921 523 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC8.7□□□□□ -1.02
COL9A1P20849 SEPT14P3-201ENST00000439401 183 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AL732372.2-207ENST00000445840 183 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 RPS29P16-201ENST00000452798 171 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC8.7□□□□□ -1.02
COL9A1P20849 SEPT14P2-201ENST00000453405 183 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC234771.3-201ENST00000454984 622 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 RPL36AP51-201ENST00000487216 318 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AL117692.1-201ENST00000494283 713 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 FNIP1-203ENST00000510461 3845 ntAPPRIS P4 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 RPS23-208ENST00000512493 443 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 SEPT14P4-201ENST00000513445 186 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 Y_RNA.720-201ENST00000517166 92 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 IGLV7-35-201ENST00000523314 340 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 FO082796.1-201ENST00000523795 183 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC090079.1-201ENST00000572092 1183 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 KPNA2P3-201ENST00000584190 848 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 NRBF2P1-201ENST00000587407 859 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC8.7□□□□□ -1.02
COL9A1P20849 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC245014.2-201ENST00000603689 287 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AP001554.1-201ENST00000604533 376 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC246785.4-201ENST00000605374 287 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 ACTR3BP1-201ENST00000605584 1247 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC016405.2-201ENST00000607393 312 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC097534.2-201ENST00000609153 751 ntTSL 3 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC037198.3-201ENST00000616754 526 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 MIR6761-201ENST00000617899 72 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC245028.3-201ENST00000618197 285 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 AC068831.8-201ENST00000620171 435 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 AC090241.3-201ENST00000621730 2599 ntBASIC8.7□□□□□ -1.02
COL9A1P20849 DAZL-202ENST00000399444 3050 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 STMND1-203ENST00000536551 1322 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 COL4A6-210ENST00000621266 6627 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 RNF185-202ENST00000326132 3171 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 TCF4-209ENST00000544241 2264 ntTSL 2 BASIC8.7□□□□□ -1.02
COL9A1P20849 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 COG2-201ENST00000366668 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 ZBTB43-201ENST00000373457 5695 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
COL9A1P20849 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 IFT122-202ENST00000347300 3841 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
COL9A1P20849 RBMS2-204ENST00000550726 1452 ntTSL 2 BASIC8.7□□□□□ -1.02
COL9A1P20849 PSG9-209ENST00000621109 2019 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
COL9A1P20849 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 PRICKLE1-213ENST00000639589 5761 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
COL9A1P20849 TRIM39-203ENST00000396547 3187 ntAPPRIS P4 TSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 FZD10-AS1-201ENST00000505807 10193 ntTSL 2 BASIC8.69□□□□□ -1.02
COL9A1P20849 NSRP1P1-201ENST00000444067 1693 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 C14orf2-203ENST00000553430 1659 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 COPB2-201ENST00000333188 3360 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 ZNF557-202ENST00000414706 5736 ntAPPRIS ALT2 TSL 2 BASIC8.69□□□□□ -1.02
COL9A1P20849 AL583836.1-201ENST00000464755 2395 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
COL9A1P20849 SLC7A6-201ENST00000219343 6251 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 OR52B1P-201ENST00000316506 909 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
COL9A1P20849 RNU5D-1-201ENST00000363299 116 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 SNORA73A-201ENST00000364938 206 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC8.69□□□□□ -1.02
COL9A1P20849 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
COL9A1P20849 RNU6-723P-201ENST00000383973 107 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 RNU6-43P-201ENST00000384302 107 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 RNU6-185P-201ENST00000384421 107 ntBASIC8.69□□□□□ -1.02
COL9A1P20849 MIR525-201ENST00000384978 85 ntBASIC8.69□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms