RNA–Protein interactions for RNA: ENST00000413899.1

HMGB1P11-201, Transcript of high mobility group box 1 pseudogene 11, humanhuman

BASIC

Gene HMGB1P11, Length 637 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P11-201ENST00000413899 AEBP2Q6ZN18 517 aaPredicted RBP19.64■□□□□ 0.73
HMGB1P11-201ENST00000413899 CHIC1Q5VXU3 224 aa19.35■□□□□ 0.69
HMGB1P11-201ENST00000413899 PHF23Q9BUL5 403 aaPredicted RBP17.02■□□□□ 0.32
HMGB1P11-201ENST00000413899 SENP3Q9H4L4 574 aaPredicted RBP16.66■□□□□ 0.26
HMGB1P11-201ENST00000413899 PLPPR3Q6T4P5 718 aa15.77■□□□□ 0.12
HMGB1P11-201ENST00000413899 FOXD1Q16676 465 aa15.42■□□□□ 0.06
HMGB1P11-201ENST00000413899 PPP6R1Q9UPN7 881 aa14.95□□□□□ -0.02
HMGB1P11-201ENST00000413899 ADRA2BP18089 450 aa14.92□□□□□ -0.02
HMGB1P11-201ENST00000413899 PIAS4Q8N2W9 510 aaPredicted RBP14.56□□□□□ -0.08
HMGB1P11-201ENST00000413899 MSH5O43196 834 aa14.19□□□□□ -0.14
HMGB1P11-201ENST00000413899 PPP4R3CPQ6ZMV5 832 aa13.9□□□□□ -0.18
HMGB1P11-201ENST00000413899 KCNA4P22459 653 aa13.73□□□□□ -0.21
HMGB1P11-201ENST00000413899 SCAF1Q9H7N4 1312 aaKnown RBP13.69□□□□□ -0.22
HMGB1P11-201ENST00000413899 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
HMGB1P11-201ENST00000413899 CNKSR2Q8WXI2 1034 aa13.5□□□□□ -0.25
HMGB1P11-201ENST00000413899 MAPK8IP2Q13387 824 aaPredicted RBP13.49□□□□□ -0.25
HMGB1P11-201ENST00000413899 NPM3O75607 178 aaKnown RBP13.38□□□□□ -0.27
HMGB1P11-201ENST00000413899 DMRT2Q9Y5R5 561 aa13.33□□□□□ -0.28
HMGB1P11-201ENST00000413899 RNF216Q9NWF9 866 aaPredicted RBP13.22□□□□□ -0.29
HMGB1P11-201ENST00000413899 HOXD11P31277 338 aaPredicted RBP13.14□□□□□ -0.31
HMGB1P11-201ENST00000413899 DNAJC5BQ9UF47 199 aa13.11□□□□□ -0.31
HMGB1P11-201ENST00000413899 SLC4A1APQ9BWU0 796 aaKnown RBP13.1□□□□□ -0.31
HMGB1P11-201ENST00000413899 EHMT2Q96KQ7 1210 aa12.84□□□□□ -0.35
HMGB1P11-201ENST00000413899 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
HMGB1P11-201ENST00000413899 ZBTB22O15209 634 aa12.65□□□□□ -0.38
HMGB1P11-201ENST00000413899 DCAF8L1A6NGE4 600 aa12.63□□□□□ -0.39
HMGB1P11-201ENST00000413899 POTEDQ86YR6 584 aa12.63□□□□□ -0.39
HMGB1P11-201ENST00000413899 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
HMGB1P11-201ENST00000413899 SLC4A2P04920 1241 aa12.61□□□□□ -0.39
HMGB1P11-201ENST00000413899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.44□□□□□ -0.42
HMGB1P11-201ENST00000413899 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
HMGB1P11-201ENST00000413899 U3KPZ7 1027 aaPredicted RBP12.29□□□□□ -0.44
HMGB1P11-201ENST00000413899 ATXN8OSP0DMR3 200 aa12.22□□□□□ -0.45
HMGB1P11-201ENST00000413899 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.21□□□□□ -0.45
HMGB1P11-201ENST00000413899 HNRNPUL2Q1KMD3 747 aaKnown RBP12.21□□□□□ -0.45
HMGB1P11-201ENST00000413899 RNF39Q9H2S5 420 aa12.18□□□□□ -0.46
HMGB1P11-201ENST00000413899 SAMD1Q6SPF0 538 aaPredicted RBP12.17□□□□□ -0.46
HMGB1P11-201ENST00000413899 APLP2Q06481 763 aa12.05□□□□□ -0.48
HMGB1P11-201ENST00000413899 C1QBPQ07021 282 aaKnown RBP12.05□□□□□ -0.48
HMGB1P11-201ENST00000413899 ATF5Q9Y2D1 282 aaPredicted RBP12□□□□□ -0.49
HMGB1P11-201ENST00000413899 SPINK5Q9NQ38 1064 aaPredicted RBP11.87□□□□□ -0.51
HMGB1P11-201ENST00000413899 ZNF219Q9P2Y4 722 aaPredicted RBP11.84□□□□□ -0.51
HMGB1P11-201ENST00000413899 CAPN15O75808 1086 aa11.79□□□□□ -0.52
HMGB1P11-201ENST00000413899 TRHP20396 242 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P11-201ENST00000413899 CACNB1Q02641 598 aaPredicted RBP11.7□□□□□ -0.54
HMGB1P11-201ENST00000413899 POLA2Q14181 598 aa11.64□□□□□ -0.55
HMGB1P11-201ENST00000413899 DSG3P32926 999 aa11.62□□□□□ -0.55
HMGB1P11-201ENST00000413899 ABCB7O75027 752 aa11.58□□□□□ -0.56
HMGB1P11-201ENST00000413899 ZBTB12Q9Y330 459 aaPredicted RBP11.52□□□□□ -0.57
HMGB1P11-201ENST00000413899 MKRN4PQ13434 485 aaPredicted RBP11.51□□□□□ -0.57
HMGB1P11-201ENST00000413899 FBLN2P98095 1184 aa11.49□□□□□ -0.57
HMGB1P11-201ENST00000413899 FKBP8Q14318 412 aa11.43□□□□□ -0.58
HMGB1P11-201ENST00000413899 SPDYE4A6NLX3 237 aa11.31□□□□□ -0.6
HMGB1P11-201ENST00000413899 OSCARQ8IYS5 282 aa11.24□□□□□ -0.61
HMGB1P11-201ENST00000413899 SPDYE2BA6NHP3 402 aa11.22□□□□□ -0.61
HMGB1P11-201ENST00000413899 SPDYE6P0CI01 402 aa11.22□□□□□ -0.61
HMGB1P11-201ENST00000413899 SPDYE2Q495Y8 402 aa11.22□□□□□ -0.61
HMGB1P11-201ENST00000413899 PROM2Q8N271 834 aa11.22□□□□□ -0.61
HMGB1P11-201ENST00000413899 SSUH2Q9Y2M2 353 aa11.16□□□□□ -0.62
HMGB1P11-201ENST00000413899 ZNF692Q9BU19 519 aaPredicted RBP11.14□□□□□ -0.63
HMGB1P11-201ENST00000413899 RBM42Q9BTD8 480 aaKnown RBP11.08□□□□□ -0.64
HMGB1P11-201ENST00000413899 FBXO3Q9UK99 471 aa11.03□□□□□ -0.64
HMGB1P11-201ENST00000413899 PABPN1Q86U42 306 aaKnown RBP eCLIP11□□□□□ -0.65
HMGB1P11-201ENST00000413899 AKT1S1Q96B36 256 aa10.98□□□□□ -0.65
HMGB1P11-201ENST00000413899 STAG3Q9UJ98 1225 aa10.89□□□□□ -0.67
HMGB1P11-201ENST00000413899 VASPP50552 380 aaPredicted RBP10.87□□□□□ -0.67
HMGB1P11-201ENST00000413899 REM2Q8IYK8 340 aaPredicted RBP10.85□□□□□ -0.67
HMGB1P11-201ENST00000413899 SPDYE1Q8NFV5 336 aaPredicted RBP10.83□□□□□ -0.68
HMGB1P11-201ENST00000413899 PITPNM1O00562 1244 aa10.72□□□□□ -0.69
HMGB1P11-201ENST00000413899 AMER1Q5JTC6 1135 aaPredicted RBP10.72□□□□□ -0.69
HMGB1P11-201ENST00000413899 IFNLR1Q8IU57 520 aaPredicted RBP10.72□□□□□ -0.69
HMGB1P11-201ENST00000413899 CLEC11AQ9Y240 323 aa10.7□□□□□ -0.7
HMGB1P11-201ENST00000413899 MIER1Q8N108 512 aa10.68□□□□□ -0.7
HMGB1P11-201ENST00000413899 PLCD3Q8N3E9 789 aa10.68□□□□□ -0.7
HMGB1P11-201ENST00000413899 PRR29P0C7W0 189 aa10.67□□□□□ -0.7
HMGB1P11-201ENST00000413899 RTN4Q9NQC3 1192 aaKnown RBP10.66□□□□□ -0.7
HMGB1P11-201ENST00000413899 PLEKHG5O94827 1062 aa10.62□□□□□ -0.71
HMGB1P11-201ENST00000413899 CREBZFQ9NS37 354 aa10.6□□□□□ -0.71
HMGB1P11-201ENST00000413899 ZBTB47Q9UFB7 747 aaPredicted RBP10.6□□□□□ -0.71
HMGB1P11-201ENST00000413899 KLHL34Q8N239 644 aa10.59□□□□□ -0.71
HMGB1P11-201ENST00000413899 SPOCK2Q92563 424 aa10.58□□□□□ -0.72
HMGB1P11-201ENST00000413899 CHRDL2Q6WN34 429 aa10.54□□□□□ -0.72
HMGB1P11-201ENST00000413899 MNX1P50219 401 aaPredicted RBP10.53□□□□□ -0.72
HMGB1P11-201ENST00000413899 FXR2P51116 673 aaKnown RBP eCLIP10.52□□□□□ -0.73
HMGB1P11-201ENST00000413899 NUBP1P53384 320 aa10.44□□□□□ -0.74
HMGB1P11-201ENST00000413899 PIP4P2Q8N4L2 257 aa10.44□□□□□ -0.74
HMGB1P11-201ENST00000413899 PRKAR2AP13861 404 aaKnown RBP10.43□□□□□ -0.74
HMGB1P11-201ENST00000413899 PKD2Q13563 968 aa10.43□□□□□ -0.74
HMGB1P11-201ENST00000413899 CHADLQ6NUI6 762 aa10.43□□□□□ -0.74
HMGB1P11-201ENST00000413899 NPM1P06748 294 aaKnown RBP eCLIP10.42□□□□□ -0.74
HMGB1P11-201ENST00000413899 FARP1Q9Y4F1 1045 aaPredicted RBP10.41□□□□□ -0.74
HMGB1P11-201ENST00000413899 GSE1Q14687 1217 aa10.36□□□□□ -0.75
HMGB1P11-201ENST00000413899 RASEFQ8IZ41 740 aa10.34□□□□□ -0.75
HMGB1P11-201ENST00000413899 TRIM41Q8WV44 630 aa10.34□□□□□ -0.75
HMGB1P11-201ENST00000413899 FAM212AQ96EL1 285 aa10.33□□□□□ -0.76
HMGB1P11-201ENST00000413899 CIZ1Q9ULV3 898 aaPredicted RBP10.33□□□□□ -0.76
HMGB1P11-201ENST00000413899 ECM2O94769 699 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P11-201ENST00000413899 DCAF8Q5TAQ9 597 aa10.3□□□□□ -0.76
HMGB1P11-201ENST00000413899 CHRM1P11229 460 aaPredicted RBP10.25□□□□□ -0.77
HMGB1P11-201ENST00000413899 RGL2O15211 777 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 521 ms