RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
COL4A6-210ENST00000621266 NISCHQ9Y2I1 1504 aa16.2■□□□□ 0.18
COL4A6-210ENST00000621266 PELP1Q8IZL8 1130 aaKnown RBP16.18■□□□□ 0.18
COL4A6-210ENST00000621266 SHROOM4Q9ULL8 1493 aa15.74■□□□□ 0.11
COL4A6-210ENST00000621266 ERICH6Q7L0X2 663 aa15.73■□□□□ 0.11
COL4A6-210ENST00000621266 SUPT5HO00267 1087 aaKnown RBP15.7■□□□□ 0.1
COL4A6-210ENST00000621266 EHMT2Q96KQ7 1210 aa15.67■□□□□ 0.1
COL4A6-210ENST00000621266 MYT1Q01538 1121 aa15.61■□□□□ 0.09
COL4A6-210ENST00000621266 CCER1Q8TC90 406 aaPredicted RBP15.42■□□□□ 0.06
COL4A6-210ENST00000621266 CENPBP07199 599 aaPredicted RBP15.4■□□□□ 0.06
COL4A6-210ENST00000621266 PCGF6Q9BYE7 350 aa15.28■□□□□ 0.04
COL4A6-210ENST00000621266 TTBK1Q5TCY1 1321 aaPredicted RBP15.16■□□□□ 0.02
COL4A6-210ENST00000621266 YTHDC1Q96MU7 727 aaKnown RBP15.13■□□□□ 0.01
COL4A6-210ENST00000621266 APLP2Q06481 763 aa15.08■□□□□ 0
COL4A6-210ENST00000621266 RANGAP1P46060 587 aaPredicted RBP15.08■□□□□ 0
COL4A6-210ENST00000621266 FAM9AQ8IZU1 332 aaPredicted RBP15.04■□□□□ -0
COL4A6-210ENST00000621266 NEFLP07196 543 aa15.03■□□□□ -0
COL4A6-210ENST00000621266 ZEB1P37275 1124 aaPredicted RBP14.97□□□□□ -0.01
COL4A6-210ENST00000621266 ATP1B4Q9UN42 357 aaPredicted RBP14.94□□□□□ -0.02
COL4A6-210ENST00000621266 DAXXQ9UER7 740 aaPredicted RBP14.76□□□□□ -0.05
COL4A6-210ENST00000621266 MYT1LQ9UL68 1186 aa14.61□□□□□ -0.07
COL4A6-210ENST00000621266 TRIM41Q8WV44 630 aa14.59□□□□□ -0.07
COL4A6-210ENST00000621266 RTL5Q5HYW3 569 aaPredicted RBP14.57□□□□□ -0.08
COL4A6-210ENST00000621266 ABCC9O60706 1549 aa14.52□□□□□ -0.08
COL4A6-210ENST00000621266 HRCP23327 699 aa14.5□□□□□ -0.09
COL4A6-210ENST00000621266 CHIC1Q5VXU3 224 aa14.49□□□□□ -0.09
COL4A6-210ENST00000621266 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
COL4A6-210ENST00000621266 PPARGC1BQ86YN6 1023 aaKnown RBP14.46□□□□□ -0.09
COL4A6-210ENST00000621266 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.46□□□□□ -0.1
COL4A6-210ENST00000621266 HNRNPUL2Q1KMD3 747 aaKnown RBP14.46□□□□□ -0.1
COL4A6-210ENST00000621266 UBTFP17480 764 aaKnown RBP14.45□□□□□ -0.1
COL4A6-210ENST00000621266 ZNF316A6NFI3 1004 aaPredicted RBP14.43□□□□□ -0.1
COL4A6-210ENST00000621266 POLR3GLQ9BT43 218 aa14.32□□□□□ -0.12
COL4A6-210ENST00000621266 CNGB1Q14028 1251 aaPredicted RBP14.31□□□□□ -0.12
COL4A6-210ENST00000621266 TRIM26Q12899 539 aaPredicted RBP14.3□□□□□ -0.12
COL4A6-210ENST00000621266 BCANQ96GW7 911 aa14.25□□□□□ -0.13
COL4A6-210ENST00000621266 CLSPNQ9HAW4 1339 aa14.24□□□□□ -0.13
COL4A6-210ENST00000621266 GTF3C3Q9Y5Q9 886 aa14.23□□□□□ -0.13
COL4A6-210ENST00000621266 EIF5BO60841 1220 aaKnown RBP14.22□□□□□ -0.13
COL4A6-210ENST00000621266 FBLN2P98095 1184 aa14.17□□□□□ -0.14
COL4A6-210ENST00000621266 DIEXFQ68CQ4 756 aaKnown RBP14.17□□□□□ -0.14
COL4A6-210ENST00000621266 ITGAEP38570 1179 aa14.12□□□□□ -0.15
COL4A6-210ENST00000621266 CDK11AQ9UQ88 783 aaPredicted RBP14.06□□□□□ -0.16
COL4A6-210ENST00000621266 SLC4A1APQ9BWU0 796 aaKnown RBP14□□□□□ -0.17
COL4A6-210ENST00000621266 GLIPR1L2Q4G1C9 344 aa13.99□□□□□ -0.17
COL4A6-210ENST00000621266 PLPPR3Q6T4P5 718 aa13.98□□□□□ -0.17
COL4A6-210ENST00000621266 LOC105371045A0A1W2PR82 267 aa13.91□□□□□ -0.18
COL4A6-210ENST00000621266 NPM2Q86SE8 214 aaKnown RBP13.87□□□□□ -0.19
COL4A6-210ENST00000621266 ANP32AP39687 249 aaKnown RBP13.86□□□□□ -0.19
COL4A6-210ENST00000621266 ACIN1Q9UKV3 1341 aaKnown RBP13.86□□□□□ -0.19
COL4A6-210ENST00000621266 ARID3CA6NKF2 412 aa13.85□□□□□ -0.19
COL4A6-210ENST00000621266 BCL11AQ9H165 835 aa13.83□□□□□ -0.2
COL4A6-210ENST00000621266 NBR1Q14596 966 aa13.77□□□□□ -0.21
COL4A6-210ENST00000621266 ZBTB47Q9UFB7 747 aaPredicted RBP13.74□□□□□ -0.21
COL4A6-210ENST00000621266 ANP32BQ92688 251 aaKnown RBP13.73□□□□□ -0.21
COL4A6-210ENST00000621266 ANP32CO43423 234 aa13.73□□□□□ -0.21
COL4A6-210ENST00000621266 FAM50AQ14320 339 aaKnown RBP13.72□□□□□ -0.21
COL4A6-210ENST00000621266 NEUROD1Q13562 356 aa13.7□□□□□ -0.22
COL4A6-210ENST00000621266 ARXQ96QS3 562 aa13.69□□□□□ -0.22
COL4A6-210ENST00000621266 SCRIBQ14160 1630 aa13.69□□□□□ -0.22
COL4A6-210ENST00000621266 P3H3Q8IVL6 736 aa13.67□□□□□ -0.22
COL4A6-210ENST00000621266 CANXP27824 592 aaKnown RBP13.67□□□□□ -0.22
COL4A6-210ENST00000621266 TRIM52Q96A61 297 aa13.66□□□□□ -0.22
COL4A6-210ENST00000621266 FKBP8Q14318 412 aa13.65□□□□□ -0.22
COL4A6-210ENST00000621266 ESF1Q9H501 851 aaKnown RBP13.58□□□□□ -0.24
COL4A6-210ENST00000621266 SLC24A1O60721 1099 aa13.58□□□□□ -0.24
COL4A6-210ENST00000621266 HSP90AA1P07900 732 aaKnown RBP13.56□□□□□ -0.24
COL4A6-210ENST00000621266 ZNF777Q9ULD5 760 aaPredicted RBP13.56□□□□□ -0.24
COL4A6-210ENST00000621266 NPM1P06748 294 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL4A6-210ENST00000621266 ZNF326Q5BKZ1 582 aaKnown RBP13.53□□□□□ -0.24
COL4A6-210ENST00000621266 SCAF1Q9H7N4 1312 aaKnown RBP13.51□□□□□ -0.25
COL4A6-210ENST00000621266 RTN4Q9NQC3 1192 aaKnown RBP13.46□□□□□ -0.25
COL4A6-210ENST00000621266 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
COL4A6-210ENST00000621266 UPF2Q9HAU5 1272 aaKnown RBP13.43□□□□□ -0.26
COL4A6-210ENST00000621266 SENP3Q9H4L4 574 aaPredicted RBP13.43□□□□□ -0.26
COL4A6-210ENST00000621266 TNNT2P45379 298 aaPredicted RBP13.42□□□□□ -0.26
COL4A6-210ENST00000621266 CHGAP10645 457 aaKnown RBP13.42□□□□□ -0.26
COL4A6-210ENST00000621266 CSRNP3Q8WYN3 585 aa13.41□□□□□ -0.26
COL4A6-210ENST00000621266 ZCCHC6Q5VYS8 1495 aaKnown RBP13.41□□□□□ -0.26
COL4A6-210ENST00000621266 ANP32EQ9BTT0 268 aa13.4□□□□□ -0.26
COL4A6-210ENST00000621266 AMER1Q5JTC6 1135 aaPredicted RBP13.36□□□□□ -0.27
COL4A6-210ENST00000621266 TRHP20396 242 aaPredicted RBP13.36□□□□□ -0.27
COL4A6-210ENST00000621266 PLEKHG5O94827 1062 aa13.36□□□□□ -0.27
COL4A6-210ENST00000621266 HNRNPUQ00839 825 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL4A6-210ENST00000621266 TRIM44Q96DX7 344 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-210ENST00000621266 CHMP7Q8WUX9 453 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-210ENST00000621266 CCDC136Q96JN2 1154 aa13.34□□□□□ -0.27
COL4A6-210ENST00000621266 NAP1L5Q96NT1 182 aaPredicted RBP13.34□□□□□ -0.27
COL4A6-210ENST00000621266 IRX6P78412 446 aaPredicted RBP13.33□□□□□ -0.28
COL4A6-210ENST00000621266 ERCC6Q03468 1493 aa13.33□□□□□ -0.28
COL4A6-210ENST00000621266 NEFMP07197 916 aa13.31□□□□□ -0.28
COL4A6-210ENST00000621266 FAM9BQ8IZU0 186 aa13.3□□□□□ -0.28
COL4A6-210ENST00000621266 SALL2Q9Y467 1007 aaPredicted RBP13.3□□□□□ -0.28
COL4A6-210ENST00000621266 CCDC180Q9P1Z9 1646 aa13.3□□□□□ -0.28
COL4A6-210ENST00000621266 CDK11BP21127 795 aaKnown RBP13.29□□□□□ -0.28
COL4A6-210ENST00000621266 RB1CC1Q8TDY2 1594 aa13.29□□□□□ -0.28
COL4A6-210ENST00000621266 A0A0G2JS52 829 aa13.27□□□□□ -0.28
COL4A6-210ENST00000621266 ARID4BQ4LE39 1312 aaPredicted RBP13.27□□□□□ -0.28
COL4A6-210ENST00000621266 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL4A6-210ENST00000621266 KCNH8Q96L42 1107 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms