Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 SNORD96A-201ENST00000606577 79 ntBASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 NF1P10-201ENST00000613227 742 ntBASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 U1.41-201ENST00000617626 165 ntBASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 AC010624.4-201ENST00000597606 1351 ntBASIC6.06□□□□□ -1.44
NUP54Q7Z3B4 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC009779.8-201ENST00000641684 4384 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 BRD7P6-201ENST00000431406 1860 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC217777.1-201ENST00000570034 1471 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 OR7A2P-201ENST00000304105 930 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 U3.52-201ENST00000384034 216 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 RNU1-46P-201ENST00000384425 164 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 UBTFL2-201ENST00000411859 1191 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 VN1R31P-201ENST00000417498 730 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 RFESDP1-201ENST00000422350 461 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AL645939.3-201ENST00000435408 225 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 CCNJP1-201ENST00000450600 1149 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 RPL19P11-201ENST00000495944 589 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC131392.1-201ENST00000506490 633 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 SCARNA5-201ENST00000516201 276 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC008429.2-201ENST00000523057 864 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 IGLV3-6-201ENST00000523937 250 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 KCTD9P4-201ENST00000526766 1166 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC130364.2-201ENST00000528639 604 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC026956.1-201ENST00000558741 396 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC092718.4-201ENST00000566639 716 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 AC099654.15-201ENST00000639802 509 ntBASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NUP54Q7Z3B4 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 AP000432.2-201ENST00000624164 2048 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 CASC19-228ENST00000641414 1684 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 FUNDC2P3-201ENST00000334716 533 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 VIM2P-201ENST00000402383 1294 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 RPL12P23-201ENST00000405880 490 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 AC096644.3-201ENST00000416788 338 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 AL139415.1-201ENST00000424862 352 ntBASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
NUP54Q7Z3B4 AC092106.2-201ENST00000436597 487 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms