Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC8.18□□□□□ -1.1
HOXC9P31274 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC8.18□□□□□ -1.1
HOXC9P31274 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 JPX-212ENST00000639185 9658 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 CTAGE11P-201ENST00000451540 2353 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 AC123769.2-201ENST00000624332 5984 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 RNU1-24P-201ENST00000364285 165 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 AC245060.4-201ENST00000413293 1121 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 Z68694.1-201ENST00000413929 841 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 AC245884.2-201ENST00000426257 404 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC8.17□□□□□ -1.1
HOXC9P31274 SUMO2P3-201ENST00000438311 288 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 RN7SL717P-201ENST00000478343 297 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC8.17□□□□□ -1.1
HOXC9P31274 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC8.17□□□□□ -1.1
HOXC9P31274 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC8.17□□□□□ -1.1
HOXC9P31274 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC8.17□□□□□ -1.1
HOXC9P31274 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC8.17□□□□□ -1.1
HOXC9P31274 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC8.17□□□□□ -1.1
HOXC9P31274 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 ZNF322P1-201ENST00000568013 1209 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 MIR4776-2-201ENST00000580204 80 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 RNU4ATAC-201ENST00000580972 127 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC8.17□□□□□ -1.1
HOXC9P31274 AP001541.1-201ENST00000623322 1904 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 GNL2P1-201ENST00000451274 2190 ntBASIC8.17□□□□□ -1.1
HOXC9P31274 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 ERG-202ENST00000398897 4651 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
HOXC9P31274 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
HOXC9P31274 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC8.17□□□□□ -1.1
HOXC9P31274 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
HOXC9P31274 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
HOXC9P31274 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 MIR323A-201ENST00000362199 86 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 RNU11-6P-201ENST00000391127 133 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC8.16□□□□□ -1.1
HOXC9P31274 AC010740.1-201ENST00000417035 684 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC8.16□□□□□ -1.1
HOXC9P31274 RBPJP7-201ENST00000442803 1447 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 RPL36AP39-201ENST00000445859 318 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 RBPJP5-201ENST00000449433 1447 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 AL445665.1-202ENST00000452436 324 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC8.16□□□□□ -1.1
HOXC9P31274 AC063923.1-201ENST00000478982 1619 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 SLC25A14P1-201ENST00000502867 901 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC8.16□□□□□ -1.1
HOXC9P31274 IGHVIII-67-4-201ENST00000524281 296 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 AP002370.1-201ENST00000528055 1602 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC8.16□□□□□ -1.1
HOXC9P31274 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC8.16□□□□□ -1.1
HOXC9P31274 AC079600.1-201ENST00000550326 297 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 AL136131.3-201ENST00000607600 188 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 BX323046.1-201ENST00000610145 535 ntBASIC8.16□□□□□ -1.1
HOXC9P31274 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
HOXC9P31274 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
HOXC9P31274 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
HOXC9P31274 AC027088.4-201ENST00000611559 1947 ntBASIC8.15□□□□□ -1.1
HOXC9P31274 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC8.15□□□□□ -1.1
HOXC9P31274 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
HOXC9P31274 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC8.15□□□□□ -1.1
HOXC9P31274 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms