Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
IFT140Q96RY7 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC10.07□□□□□ -0.8
IFT140Q96RY7 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
IFT140Q96RY7 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
IFT140Q96RY7 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC10.07□□□□□ -0.8
IFT140Q96RY7 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
IFT140Q96RY7 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
IFT140Q96RY7 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
IFT140Q96RY7 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
IFT140Q96RY7 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC10.07□□□□□ -0.8
IFT140Q96RY7 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AP003972.1-201ENST00000625192 5446 ntBASIC10.06□□□□□ -0.8
IFT140Q96RY7 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 RPL35AP24-201ENST00000413846 330 ntBASIC10.06□□□□□ -0.8
IFT140Q96RY7 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 CDC42P3-201ENST00000518493 633 ntBASIC10.06□□□□□ -0.8
IFT140Q96RY7 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AL132640.3-201ENST00000630473 177 ntBASIC10.06□□□□□ -0.8
IFT140Q96RY7 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AC007938.2-201ENST00000604666 2634 ntBASIC10.06□□□□□ -0.8
IFT140Q96RY7 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 AL359976.1-201ENST00000418655 3528 ntBASIC10.06□□□□□ -0.8
IFT140Q96RY7 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 ZSCAN31-203ENST00000414429 3551 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
IFT140Q96RY7 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
IFT140Q96RY7 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 METTL15P3-201ENST00000415522 1221 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 AC113412.1-201ENST00000425840 504 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 AL445928.1-201ENST00000435545 222 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 OR7E116P-201ENST00000448529 957 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 HMGB1P42-201ENST00000532126 553 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 ELOCP28-201ENST00000590044 317 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 AC005840.5-201ENST00000619166 599 ntBASIC10.05□□□□□ -0.8
IFT140Q96RY7 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 COG2-209ENST00000534989 2963 ntTSL 2 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC10.05□□□□□ -0.8
IFT140Q96RY7 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
IFT140Q96RY7 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 MRPL53P1-201ENST00000414323 319 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 NMD3P2-201ENST00000421815 761 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 AL590762.4-201ENST00000425885 253 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC084337.1-201ENST00000524809 686 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 MIR6837-201ENST00000620884 64 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 DPY19L2P2-203ENST00000435536 1858 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 KRT73-AS1-203ENST00000552364 3808 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 YES1P1-201ENST00000418510 1628 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
IFT140Q96RY7 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms