Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.68□□□□□ -1.5
FOXF1Q12946 AP001885.1-201ENST00000621658 558 ntBASIC5.68□□□□□ -1.5
FOXF1Q12946 AC022726.2-201ENST00000634673 547 ntBASIC5.68□□□□□ -1.5
FOXF1Q12946 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
FOXF1Q12946 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.68□□□□□ -1.5
FOXF1Q12946 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.68□□□□□ -1.5
FOXF1Q12946 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXF1Q12946 LINC01616-201ENST00000561816 2280 ntBASIC5.68□□□□□ -1.5
FOXF1Q12946 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXF1Q12946 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXF1Q12946 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
FOXF1Q12946 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXF1Q12946 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXF1Q12946 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXF1Q12946 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
FOXF1Q12946 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.67□□□□□ -1.5
FOXF1Q12946 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AL645936.1-201ENST00000441979 518 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 MORF4-201ENST00000447135 971 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC103563.5-201ENST00000455643 364 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC5.67□□□□□ -1.5
FOXF1Q12946 KHDC1P1-201ENST00000511053 508 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 RNA5SP441-201ENST00000516809 88 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AC092865.1-201ENST00000544395 1023 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXF1Q12946 BMS1P16-201ENST00000556075 1147 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC121758.1-202ENST00000556917 658 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.67□□□□□ -1.5
FOXF1Q12946 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 AL078601.3-201ENST00000573303 535 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC004232.2-201ENST00000574245 821 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 RN7SL230P-201ENST00000580835 303 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 DYNLL1P1-201ENST00000595442 269 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AL135999.3-201ENST00000610501 812 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC022106.1-201ENST00000612834 766 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AC010998.3-201ENST00000613871 631 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.67□□□□□ -1.5
FOXF1Q12946 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.67□□□□□ -1.5
FOXF1Q12946 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
FOXF1Q12946 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.67□□□□□ -1.5
FOXF1Q12946 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
FOXF1Q12946 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
FOXF1Q12946 AP000641.1-201ENST00000531988 1639 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
FOXF1Q12946 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXF1Q12946 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXF1Q12946 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXF1Q12946 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXF1Q12946 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
FOXF1Q12946 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXF1Q12946 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXF1Q12946 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXF1Q12946 AC090181.3-201ENST00000624777 1514 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 RN7SKP171-201ENST00000364417 303 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 SNORA43.1-201ENST00000364863 140 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
FOXF1Q12946 RNA5SP198-201ENST00000410376 127 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 AC068138.1-201ENST00000412635 217 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 AL359885.1-201ENST00000415786 903 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXF1Q12946 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXF1Q12946 AC016908.1-201ENST00000442571 1219 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 AC007383.1-201ENST00000445875 636 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 RN7SL221P-201ENST00000466190 281 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 SNX18P24-201ENST00000505249 671 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 HMGN1P17-201ENST00000513734 295 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXF1Q12946 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
FOXF1Q12946 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXF1Q12946 NATP-201ENST00000523491 878 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 NPIPB14P-203ENST00000532298 987 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 AP001858.2-201ENST00000536213 601 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 OR4H6P-201ENST00000563771 921 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXF1Q12946 AL591167.1-201ENST00000607321 456 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXF1Q12946 DPY19L1P1-201ENST00000417811 2594 ntBASIC5.66□□□□□ -1.5
FOXF1Q12946 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXF1Q12946 AC079753.1-201ENST00000623243 3868 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms