Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.18□□□□□ -1.42
HOXC4P09017 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 COX6B1P3-201ENST00000312310 260 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 RNA5SP333-201ENST00000363466 118 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 RNU1-49P-201ENST00000363468 159 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 RN7SKP275-201ENST00000364626 301 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 RNA5SP334-201ENST00000364825 118 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
HOXC4P09017 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 MTND4LP17-201ENST00000414607 293 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.18□□□□□ -1.42
HOXC4P09017 VPS25P1-201ENST00000455691 508 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 NPM1P27-201ENST00000502784 830 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 RNA5SP434-201ENST00000516647 121 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 SUMO2P19-201ENST00000518920 295 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.18□□□□□ -1.42
HOXC4P09017 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 MRPS21P8-201ENST00000569196 235 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 GLYATL1P2-202ENST00000588046 902 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 AL591167.1-201ENST00000607321 456 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC4P09017 MIR6778-201ENST00000617912 73 ntBASIC6.18□□□□□ -1.42
HOXC4P09017 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC4P09017 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
HOXC4P09017 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.17□□□□□ -1.42
HOXC4P09017 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
HOXC4P09017 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
HOXC4P09017 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 SNORA51.9-201ENST00000384295 124 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC4P09017 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
HOXC4P09017 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC4P09017 CYP4F30P-202ENST00000420048 405 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 AC002069.1-201ENST00000429649 1159 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC4P09017 OR3D1P-201ENST00000438288 955 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 PPIAP7-201ENST00000454070 489 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 AP000620.1-201ENST00000527147 504 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.17□□□□□ -1.42
HOXC4P09017 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC4P09017 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC4P09017 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC4P09017 AC006924.1-201ENST00000610750 559 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 AC092266.1-201ENST00000610958 165 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 AL445649.1-201ENST00000615941 691 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 MIR6071-201ENST00000616741 78 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 AC025262.3-201ENST00000623666 360 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC4P09017 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.17□□□□□ -1.42
HOXC4P09017 AC024651.2-201ENST00000562480 2098 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.17□□□□□ -1.42
HOXC4P09017 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 AC110597.1-201ENST00000562669 3176 ntBASIC6.17□□□□□ -1.42
HOXC4P09017 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC4P09017 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms