Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.22□□□□□ -1.41
SHMT2P34897 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.22□□□□□ -1.41
SHMT2P34897 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.22□□□□□ -1.41
SHMT2P34897 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.22□□□□□ -1.41
SHMT2P34897 TPRX1P1-201ENST00000557620 319 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.22□□□□□ -1.41
SHMT2P34897 AC090616.1-201ENST00000583895 447 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.22□□□□□ -1.41
SHMT2P34897 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.22□□□□□ -1.41
SHMT2P34897 AL122023.1-201ENST00000622847 530 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SHMT2P34897 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
SHMT2P34897 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
SHMT2P34897 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.41
SHMT2P34897 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.41
SHMT2P34897 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.21□□□□□ -1.41
SHMT2P34897 MAPK10-287ENST00000641217 3037 ntBASIC6.21□□□□□ -1.41
SHMT2P34897 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.21□□□□□ -1.41
SHMT2P34897 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SHMT2P34897 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SHMT2P34897 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.21□□□□□ -1.42
SHMT2P34897 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.21□□□□□ -1.42
SHMT2P34897 AC110373.1-201ENST00000505994 3505 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 RNA5SP77-201ENST00000365394 120 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AC003045.1-201ENST00000398779 713 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.21□□□□□ -1.42
SHMT2P34897 AL359885.1-201ENST00000415786 903 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AC097721.1-201ENST00000427150 1253 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AC097359.1-201ENST00000447946 463 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.21□□□□□ -1.42
SHMT2P34897 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.21□□□□□ -1.42
SHMT2P34897 GM2AP2-201ENST00000491764 562 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 COX6B1P4-201ENST00000519826 484 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AC084337.1-201ENST00000524809 686 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 OR4A41P-201ENST00000533053 928 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 OR4A6P-201ENST00000534364 970 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.21□□□□□ -1.42
SHMT2P34897 AC008055.1-201ENST00000547032 609 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.21□□□□□ -1.42
SHMT2P34897 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.21□□□□□ -1.42
SHMT2P34897 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SHMT2P34897 AC121758.1-202ENST00000556917 658 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.21□□□□□ -1.42
SHMT2P34897 AC073046.2-201ENST00000604756 527 ntBASIC6.21□□□□□ -1.42
SHMT2P34897 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.21□□□□□ -1.42
SHMT2P34897 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SHMT2P34897 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SHMT2P34897 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.21□□□□□ -1.42
SHMT2P34897 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SHMT2P34897 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
SHMT2P34897 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.21□□□□□ -1.42
SHMT2P34897 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
SHMT2P34897 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SHMT2P34897 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
SHMT2P34897 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.2□□□□□ -1.42
SHMT2P34897 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SHMT2P34897 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 RPL11P4-201ENST00000332269 436 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.2□□□□□ -1.42
SHMT2P34897 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 OSTCP4-201ENST00000424397 449 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
SHMT2P34897 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.2□□□□□ -1.42
SHMT2P34897 RN7SL643P-201ENST00000471845 291 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.2□□□□□ -1.42
SHMT2P34897 H3F3AP5-201ENST00000475267 429 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.2□□□□□ -1.42
SHMT2P34897 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHMT2P34897 RN7SKP248-201ENST00000516278 305 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 IGHV4-55-201ENST00000520889 368 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.2□□□□□ -1.42
SHMT2P34897 IGHV1-14-201ENST00000523391 241 ntBASIC6.2□□□□□ -1.42
SHMT2P34897 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.2□□□□□ -1.42
SHMT2P34897 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC6.2□□□□□ -1.42
SHMT2P34897 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.2□□□□□ -1.42
SHMT2P34897 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC6.2□□□□□ -1.42
SHMT2P34897 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms