Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL158209.2-201ENST00000619266 216 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 AC005899.6-201ENST00000620729 297 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 AC021106.3-201ENST00000623925 531 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC7.18□□□□□ -1.26
COL8A1P27658 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC7.18□□□□□ -1.26
COL8A1P27658 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL8A1P27658 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC7.18□□□□□ -1.26
COL8A1P27658 MGC27382-202ENST00000436742 1993 ntTSL 2 BASIC7.18□□□□□ -1.26
COL8A1P27658 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL8A1P27658 LRRC66-201ENST00000343457 3327 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL8A1P27658 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC7.18□□□□□ -1.26
COL8A1P27658 AC000036.1-201ENST00000449652 2030 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL8A1P27658 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
COL8A1P27658 BRAFP1-201ENST00000445336 2703 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 SLFN13-210ENST00000534689 3058 ntTSL 2 BASIC7.18□□□□□ -1.26
COL8A1P27658 ZNF546-207ENST00000600094 3426 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
COL8A1P27658 CLEC4M-204ENST00000359059 1733 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL8A1P27658 IFIT1P1-201ENST00000400497 1449 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 RBPJP6-201ENST00000411556 1431 ntBASIC7.18□□□□□ -1.26
COL8A1P27658 AC020895.2-201ENST00000624996 1839 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 CCDC174-202ENST00000383794 2942 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 LDHA-201ENST00000227157 1887 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 MAPK10-325ENST00000641537 2623 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 LGSN-201ENST00000370657 1949 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 ABRAXAS1-201ENST00000321945 4291 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 HS3ST5-202ENST00000411826 2744 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 ANKUB1-201ENST00000446160 2419 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 AL450992.1-201ENST00000432386 4109 ntTSL 2 BASIC7.17□□□□□ -1.26
COL8A1P27658 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 GART-201ENST00000361093 2149 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 Y_RNA.138-201ENST00000363462 102 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC7.17□□□□□ -1.26
COL8A1P27658 Y_RNA.431-201ENST00000384086 102 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 RNU4-61P-201ENST00000411243 107 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 OR52N3P-201ENST00000413417 934 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 OR2L6P-201ENST00000416377 940 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AL161742.1-201ENST00000418154 584 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC018630.2-202ENST00000422992 927 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 GAPDHP55-201ENST00000423136 803 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 AL365356.3-201ENST00000427341 657 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 GPM6BP2-201ENST00000432046 144 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 RPSAP62-201ENST00000432596 833 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 LINC01852-201ENST00000434223 967 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 ARMC4P1-201ENST00000438905 707 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AL450263.2-201ENST00000439400 589 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 GPM6BP1-201ENST00000446387 144 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC007000.1-201ENST00000453064 794 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 RPL21P134-201ENST00000453468 483 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 ATP5A1P7-201ENST00000453978 1279 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 RPL7AP52-201ENST00000458096 790 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 RPSAP24-201ENST00000461543 873 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 RPL35AP19-201ENST00000469425 329 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC080188.1-201ENST00000491923 567 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC091133.4-201ENST00000511142 308 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 NTAN1P2-201ENST00000515730 940 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 NPIPP1-203ENST00000547107 1071 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 NF1P12-201ENST00000549593 583 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC015818.5-201ENST00000578659 356 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC004257.1-201ENST00000593588 277 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 AL691432.1-202ENST00000597891 502 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 AC012370.2-202ENST00000600508 1099 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 AC113349.2-201ENST00000607804 377 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC7.17□□□□□ -1.26
COL8A1P27658 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL8A1P27658 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC7.17□□□□□ -1.26
COL8A1P27658 OR13D1-202ENST00000641530 945 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL8A1P27658 ABI1-209ENST00000376166 3441 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 ZFP2-205ENST00000523286 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL8A1P27658 RAB3IP-218ENST00000553099 2674 ntTSL 2 BASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms