Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TSPY6P-201ENST00000448518 926 ntBASIC16■□□□□ 0.15
FOXA2Q9Y261 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16■□□□□ 0.15
FOXA2Q9Y261 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
FOXA2Q9Y261 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16■□□□□ 0.15
FOXA2Q9Y261 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16■□□□□ 0.15
FOXA2Q9Y261 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 ID1-201ENST00000376105 1233 ntBASIC15.99■□□□□ 0.15
FOXA2Q9Y261 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 BX276092.2-201ENST00000417668 665 ntBASIC15.99■□□□□ 0.15
FOXA2Q9Y261 AL355472.2-201ENST00000422958 438 ntBASIC15.99■□□□□ 0.15
FOXA2Q9Y261 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 KRT16P6-202ENST00000425692 1426 ntBASIC15.99■□□□□ 0.15
FOXA2Q9Y261 KRT8P17-201ENST00000453110 1448 ntBASIC15.99■□□□□ 0.15
FOXA2Q9Y261 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA2Q9Y261 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 AC005332.7-201ENST00000614046 2005 ntBASIC15.98■□□□□ 0.15
FOXA2Q9Y261 AC105020.6-201ENST00000621523 1217 ntBASIC15.98■□□□□ 0.15
FOXA2Q9Y261 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA2Q9Y261 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 MIPEPP3-201ENST00000412105 444 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 SERPINH1P1-201ENST00000419794 1249 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 HLA-L-209ENST00000420110 1011 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 GUSBP6-202ENST00000438529 1198 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 HES2-205ENST00000487437 968 ntTSL 3 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 MIR4758-201ENST00000577688 71 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 AC104771.1-201ENST00000603335 964 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 AL031963.3-201ENST00000606441 850 ntBASIC15.97■□□□□ 0.15
FOXA2Q9Y261 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 MARS-234ENST00000630571 216 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA2Q9Y261 MARS-235ENST00000630803 183 ntTSL 3 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms