Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 DPP3P2-201ENST00000416030 1696 ntBASIC19.11■□□□□ 0.65
VPS4AQ9UN37 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
VPS4AQ9UN37 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 FAM197Y4-202ENST00000622692 608 ntBASIC19.1■□□□□ 0.65
VPS4AQ9UN37 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4AQ9UN37 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 AC073912.3-201ENST00000624414 853 ntBASIC19.09■□□□□ 0.65
VPS4AQ9UN37 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4AQ9UN37 AC010980.2-201ENST00000587099 1412 ntBASIC19.08■□□□□ 0.65
VPS4AQ9UN37 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
VPS4AQ9UN37 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 ECEL1P3-201ENST00000427961 737 ntBASIC19.08■□□□□ 0.64
VPS4AQ9UN37 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 AL591742.1-201ENST00000604433 565 ntBASIC19.08■□□□□ 0.64
VPS4AQ9UN37 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4AQ9UN37 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 LSM12P1-201ENST00000411836 588 ntBASIC19.07■□□□□ 0.64
VPS4AQ9UN37 PGM5P4-201ENST00000421970 445 ntBASIC19.07■□□□□ 0.64
VPS4AQ9UN37 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.07■□□□□ 0.64
VPS4AQ9UN37 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
VPS4AQ9UN37 AL162412.1-201ENST00000567129 965 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms