Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 LSM12P1-201ENST00000411836 588 ntBASIC17.67■□□□□ 0.42
VSX1Q9NZR4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 AL050303.2-201ENST00000619798 666 ntBASIC17.67■□□□□ 0.42
VSX1Q9NZR4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 AC026185.1-201ENST00000445748 174 ntBASIC17.66■□□□□ 0.42
VSX1Q9NZR4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 AF201337.1-201ENST00000520239 748 ntBASIC17.66■□□□□ 0.42
VSX1Q9NZR4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 RAP2CP1-201ENST00000605103 478 ntBASIC17.66■□□□□ 0.42
VSX1Q9NZR4 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 MKRN4P-201ENST00000444706 1521 ntBASIC17.66■□□□□ 0.42
VSX1Q9NZR4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VSX1Q9NZR4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 AC105036.2-201ENST00000569468 176 ntBASIC17.65■□□□□ 0.42
VSX1Q9NZR4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 AL137784.2-201ENST00000607332 1000 ntBASIC17.65■□□□□ 0.42
VSX1Q9NZR4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX1Q9NZR4 PHGDH-210ENST00000641115 1638 ntBASIC17.65■□□□□ 0.42
VSX1Q9NZR4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.64■□□□□ 0.42
VSX1Q9NZR4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VSX1Q9NZR4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VSX1Q9NZR4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 AC116562.4-201ENST00000641316 2276 ntBASIC17.64■□□□□ 0.41
VSX1Q9NZR4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VSX1Q9NZR4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.63■□□□□ 0.41
VSX1Q9NZR4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms