Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 CDV3P1-201ENST00000471403 739 ntBASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 SLC7A5P1-201ENST00000568957 537 ntBASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 NTF6G-201ENST00000591094 616 ntBASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCAL1Q9NZC9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 MIR935-201ENST00000401179 91 ntBASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 CYP21A1P-202ENST00000354927 1481 ntBASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 AC007613.1-201ENST00000572811 2597 ntBASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCAL1Q9NZC9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SMARCAL1Q9NZC9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCAL1Q9NZC9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCAL1Q9NZC9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.78■□□□□ 0.92
SMARCAL1Q9NZC9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms