Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 GCSHP5-201ENST00000443090 522 ntBASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 RPPH1-201ENST00000516869 333 ntBASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 C1QBPP2-201ENST00000528754 825 ntBASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 AL359736.2-201ENST00000621992 437 ntBASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TRIM39Q9HCM9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 AL023875.1-201ENST00000640777 796 ntBASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM39Q9HCM9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 PHGDH-210ENST00000641115 1638 ntBASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 AL158047.1-201ENST00000445918 881 ntBASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms