Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 AC092666.2-201ENST00000613287 246 ntBASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
LRRC40Q9H9A6 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 AC091874.3-201ENST00000512672 1195 ntBASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
LRRC40Q9H9A6 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 AL390719.1-204ENST00000412397 1219 ntBASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 MIR4758-201ENST00000577688 71 ntBASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.08■□□□□ 0.81
LRRC40Q9H9A6 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.08■□□□□ 0.8
LRRC40Q9H9A6 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 AC073210.2-201ENST00000430369 194 ntBASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 TREX1-205ENST00000625293 1783 ntBASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.07■□□□□ 0.8
LRRC40Q9H9A6 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms