Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM4Q9C037 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.64■□□□□ 0.74
TRIM4Q9C037 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM4Q9C037 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM4Q9C037 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM4Q9C037 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
TRIM4Q9C037 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 AC128676.1-201ENST00000454392 318 ntBASIC19.64■□□□□ 0.73
TRIM4Q9C037 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TRIM4Q9C037 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM4Q9C037 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM4Q9C037 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
TRIM4Q9C037 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 AC061975.6-201ENST00000579045 1553 ntBASIC19.62■□□□□ 0.73
TRIM4Q9C037 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 AP001160.3-201ENST00000601484 763 ntBASIC19.62■□□□□ 0.73
TRIM4Q9C037 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM4Q9C037 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TRIM4Q9C037 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms