Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 MIR935-201ENST00000401179 91 ntBASIC19.82■□□□□ 0.76
VPS39Q96JC1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 OR10C1-204ENST00000622521 1039 ntBASIC19.82■□□□□ 0.76
VPS39Q96JC1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS39Q96JC1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS39Q96JC1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 AC087289.5-201ENST00000586076 3175 ntBASIC19.81■□□□□ 0.76
VPS39Q96JC1 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS39Q96JC1 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS39Q96JC1 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 AC093484.2-201ENST00000580996 2166 ntBASIC19.8■□□□□ 0.76
VPS39Q96JC1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 AC010980.2-201ENST00000587099 1412 ntBASIC19.8■□□□□ 0.76
VPS39Q96JC1 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.8■□□□□ 0.76
VPS39Q96JC1 AL589743.5-201ENST00000616611 1050 ntBASIC19.8■□□□□ 0.76
VPS39Q96JC1 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS39Q96JC1 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS39Q96JC1 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 HLA-G-202ENST00000376815 851 ntBASIC19.79■□□□□ 0.76
VPS39Q96JC1 HLA-G-203ENST00000376818 1127 ntBASIC19.79■□□□□ 0.76
VPS39Q96JC1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS39Q96JC1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
VPS39Q96JC1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS39Q96JC1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VPS39Q96JC1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS39Q96JC1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms