Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTHRC1Q96CG8 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTHRC1Q96CG8 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.4■□□□□ 0.54
CTHRC1Q96CG8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CTHRC1Q96CG8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
CTHRC1Q96CG8 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.39■□□□□ 0.53
CTHRC1Q96CG8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 ESRRAP1-201ENST00000400596 1257 ntBASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTHRC1Q96CG8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 MIR4651-201ENST00000582622 73 ntBASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTHRC1Q96CG8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 KRT17P3-201ENST00000420566 1262 ntBASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 TREX1-205ENST00000625293 1783 ntBASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.36■□□□□ 0.53
CTHRC1Q96CG8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CTHRC1Q96CG8 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTHRC1Q96CG8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.35■□□□□ 0.53
CTHRC1Q96CG8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTHRC1Q96CG8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms