Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
SKA1Q96BD8 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.27■□□□□ 0.84
SKA1Q96BD8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.27■□□□□ 0.84
SKA1Q96BD8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SKA1Q96BD8 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SKA1Q96BD8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
SKA1Q96BD8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
SKA1Q96BD8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 BX323043.1-201ENST00000641006 1765 ntBASIC20.26■□□□□ 0.83
SKA1Q96BD8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 AC069544.1-201ENST00000609399 999 ntBASIC20.26■□□□□ 0.83
SKA1Q96BD8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 AC087633.2-202ENST00000565166 1439 ntBASIC20.26■□□□□ 0.83
SKA1Q96BD8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SKA1Q96BD8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SKA1Q96BD8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SKA1Q96BD8 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SKA1Q96BD8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.24■□□□□ 0.83
SKA1Q96BD8 FP700111.2-201ENST00000619190 1892 ntBASIC20.24■□□□□ 0.83
SKA1Q96BD8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.24■□□□□ 0.83
SKA1Q96BD8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.24■□□□□ 0.83
SKA1Q96BD8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms