Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 AL691432.2-201ENST00000607222 2038 ntBASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 AC120498.9-201ENST00000339021 3867 ntBASIC18.36■□□□□ 0.53
DEPDC4Q8N2C3 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 DPP3P2-201ENST00000416030 1696 ntBASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 AC010141.2-201ENST00000452426 721 ntBASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
DEPDC4Q8N2C3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 BX119927.1-201ENST00000636596 1552 ntBASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 AC006970.2-201ENST00000450065 779 ntBASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 TREX1-205ENST00000625293 1783 ntBASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.34■□□□□ 0.53
DEPDC4Q8N2C3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
DEPDC4Q8N2C3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 ID1-201ENST00000376105 1233 ntBASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 CDCA4P2-201ENST00000441182 718 ntBASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 UBE2DNL-204ENST00000602536 740 ntBASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 AC231657.2-201ENST00000624556 255 ntBASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 Z82202.1-201ENST00000623446 1880 ntBASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms