Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 AC026271.2-201ENST00000428091 497 ntBASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC50Q8IVM0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 AC116562.4-201ENST00000641316 2276 ntBASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 BID-214ENST00000617586 542 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 AC100791.3-201ENST00000617619 330 ntBASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC50Q8IVM0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 AC006015.1-201ENST00000429970 570 ntBASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 CYP2T1P-201ENST00000432607 1285 ntBASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 AC069236.1-201ENST00000604339 616 ntBASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 AC105020.6-201ENST00000621523 1217 ntBASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 AC008694.1-202ENST00000636953 945 ntBASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC50Q8IVM0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 KRT18P68-201ENST00000392293 1000 ntBASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC50Q8IVM0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC50Q8IVM0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 PTBP1P-201ENST00000554374 1601 ntBASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 KRT8P17-201ENST00000453110 1448 ntBASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC50Q8IVM0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms