Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 HCG4P8-203ENST00000443049 980 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 EGLN1P1-201ENST00000531623 762 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 AC004263.2-201ENST00000617183 678 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 AC116407.4-201ENST00000623319 1061 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 AC011558.1-201ENST00000623459 338 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 Z98882.1-201ENST00000622160 2253 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 B3GAT3P1-201ENST00000471720 806 ntBASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 FSCN1P1-201ENST00000568912 1481 ntBASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 HMGA1P5-201ENST00000412453 271 ntBASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 AC010203.1-204ENST00000548782 407 ntBASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 CLEC4GP1-201ENST00000596555 870 ntBASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 PKD1P6-201ENST00000343738 4769 ntBASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
CSPG4Q6UVK1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 FAM207BP-201ENST00000447172 505 ntBASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 AF106564.1-201ENST00000607058 2553 ntBASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 AC139887.4-201ENST00000607877 719 ntBASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.35■□□□□ 0.21
CSPG4Q6UVK1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 AL138966.2-201ENST00000621997 464 ntBASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSPG4Q6UVK1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms