Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 AC098934.4-201ENST00000564127 592 ntBASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 PHGDH-210ENST00000641115 1638 ntBASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF549Q6P9A3 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.64■□□□□ 0.74
ZNF549Q6P9A3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF549Q6P9A3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF549Q6P9A3 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.64■□□□□ 0.74
ZNF549Q6P9A3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 SLC29A4P1-201ENST00000398760 971 ntBASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF549Q6P9A3 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 AP001271.2-201ENST00000624018 1556 ntBASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 AL138781.1-201ENST00000566567 1274 ntBASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 AC007952.6-201ENST00000573168 2673 ntBASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 AC003957.1-201ENST00000625108 2673 ntBASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF549Q6P9A3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 AC116562.4-201ENST00000641316 2276 ntBASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 MYC-209ENST00000641252 345 ntBASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
ZNF549Q6P9A3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ZNF549Q6P9A3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms