Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL7A1Q02388 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.27□□□□□ -0.13
COL7A1Q02388 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 ANKRD20A18P-201ENST00000359341 492 ntBASIC14.26□□□□□ -0.13
COL7A1Q02388 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.26□□□□□ -0.13
COL7A1Q02388 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.26□□□□□ -0.13
COL7A1Q02388 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.26□□□□□ -0.13
COL7A1Q02388 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.26□□□□□ -0.13
COL7A1Q02388 AL691432.3-201ENST00000621860 400 ntBASIC14.26□□□□□ -0.13
COL7A1Q02388 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
COL7A1Q02388 MFF-203ENST00000349901 1716 ntTSL 2 BASIC14.26□□□□□ -0.13
COL7A1Q02388 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.26□□□□□ -0.13
COL7A1Q02388 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.26□□□□□ -0.13
COL7A1Q02388 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.26□□□□□ -0.13
COL7A1Q02388 AL512604.3-201ENST00000569583 964 ntBASIC14.26□□□□□ -0.13
COL7A1Q02388 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.26□□□□□ -0.13
COL7A1Q02388 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC14.26□□□□□ -0.13
COL7A1Q02388 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.26□□□□□ -0.13
COL7A1Q02388 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL7A1Q02388 AC092338.2-201ENST00000568827 1415 ntBASIC14.26□□□□□ -0.13
COL7A1Q02388 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC14.25□□□□□ -0.13
COL7A1Q02388 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC14.25□□□□□ -0.13
COL7A1Q02388 HYMAI.1-201ENST00000620949 238 ntBASIC14.25□□□□□ -0.13
COL7A1Q02388 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.25□□□□□ -0.13
COL7A1Q02388 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.25□□□□□ -0.13
COL7A1Q02388 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.25□□□□□ -0.13
COL7A1Q02388 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
COL7A1Q02388 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
COL7A1Q02388 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL7A1Q02388 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.25□□□□□ -0.13
COL7A1Q02388 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
COL7A1Q02388 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 TSPY17P-201ENST00000450329 467 ntBASIC14.24□□□□□ -0.13
COL7A1Q02388 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.24□□□□□ -0.13
COL7A1Q02388 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.24□□□□□ -0.13
COL7A1Q02388 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC14.24□□□□□ -0.13
COL7A1Q02388 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC14.24□□□□□ -0.13
COL7A1Q02388 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC14.24□□□□□ -0.13
COL7A1Q02388 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
COL7A1Q02388 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
COL7A1Q02388 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
COL7A1Q02388 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
COL7A1Q02388 MFAP1P1-201ENST00000442257 1255 ntBASIC14.24□□□□□ -0.13
COL7A1Q02388 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.24□□□□□ -0.13
COL7A1Q02388 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.24□□□□□ -0.13
COL7A1Q02388 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.24□□□□□ -0.13
COL7A1Q02388 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL7A1Q02388 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.24□□□□□ -0.13
COL7A1Q02388 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC14.23□□□□□ -0.13
COL7A1Q02388 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms